Pinned Repositories
atacseq
ATAC-seq peak-calling, QC and differential analysis pipeline
global_E
NASH_RNASEQ
The purpose of this project was to determine differential gene expression with proinflammatory biomarkers with control v.s. diet-induced NASH mouse models. The paper can be found here: https://pubmed.ncbi.nlm.nih.gov/31398325/
nichenetr
NicheNet: predict active ligand-target links between interacting cells
statannot
add statistical annotations (pvalue significance) on an existing boxplot generated by seaborn boxplot
pycogaps
python API to the CoGAPS NMF package
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
HiC-Pro
HiC-Pro: An optimized and flexible pipeline for Hi-C data processing
signac
R toolkit for the analysis of single-cell chromatin data
dca
Deep count autoencoder for denoising scRNA-seq data
ejc043's Repositories
ejc043/atacseq
ATAC-seq peak-calling, QC and differential analysis pipeline
ejc043/global_E
ejc043/NASH_RNASEQ
The purpose of this project was to determine differential gene expression with proinflammatory biomarkers with control v.s. diet-induced NASH mouse models. The paper can be found here: https://pubmed.ncbi.nlm.nih.gov/31398325/
ejc043/nichenetr
NicheNet: predict active ligand-target links between interacting cells
ejc043/statannot
add statistical annotations (pvalue significance) on an existing boxplot generated by seaborn boxplot