Pinned Repositories
ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
data-studios-datasources
docs
Source code for the Seqera documentation portal.
fetchngs
Pipeline to fetch metadata and raw FastQ files from public and private databases
go-with-the-flow
hello
Classic hello world script in Nextflow language
nf-aggregate
Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)
nf-gwas
A nextflow pipeline to perform state-of-the-art genome-wide association studies.
tw-pywrap
Python implementation for automated pipeline launching through Tower CLI
ejseqera's Repositories
ejseqera/tw-pywrap
Python implementation for automated pipeline launching through Tower CLI
ejseqera/ampliseq
Amplicon sequencing analysis workflow using DADA2 and QIIME2
ejseqera/data-studios-datasources
ejseqera/docs
Source code for the Seqera documentation portal.
ejseqera/fetchngs
Pipeline to fetch metadata and raw FastQ files from public and private databases
ejseqera/go-with-the-flow
ejseqera/hello
Classic hello world script in Nextflow language
ejseqera/nf-aggregate
Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)
ejseqera/nf-gwas
A nextflow pipeline to perform state-of-the-art genome-wide association studies.
ejseqera/nf-test-scripts
Minimal, reproducible examples for testing of NF and/or Tower bugs
ejseqera/proteinfold
Protein 3D structure prediction pipeline
ejseqera/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
ejseqera/rnaseq-nf
A proof of concept of RNAseq pipeline
ejseqera/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
ejseqera/seqera-platform-tools
Set of scripts to interact with Seqera Platform
ejseqera/showcase
Infrastructure as code implementation of the seqeralabs/showcase Workspace in Tower Cloud
ejseqera/test-datasets
Test data to be used for automated testing with the nf-core pipelines
ejseqera/training
Nextflow training material
ejseqera/tw-e2e-poc
POC for automating Tower setup and pipeline launching through the CLI with GCP as a use-case
ejseqera/tw-pywrap-ci
Run e2e tw-pywrap implementation via CI
ejseqera/wf-human-variation