ekg/seqwish

Unable to compile seqwish

joyeuxnoel8 opened this issue · 3 comments

joyeuxnoel8 commented

Hi,

I'm trying to compile the most recent version 9bbfa70 using the suggested command cmake -H. -Bbuild && cmake --build build -- -j 3 but failed with the following message.

Preprocessed source stored into /tmp/ccPsX3pE.out file, please attach this to your bugreport.
gmake[2]: *** [CMakeFiles/seqwish.dir/src/transclosure.cpp.o] Error 1
Preprocessed source stored into /tmp/ccg93yri.out file, please attach this to your bugreport.
gmake[2]: *** [CMakeFiles/seqwish.dir/src/main.cpp.o] Error 1
Preprocessed source stored into /tmp/cc2T9qbM.out file, please attach this to your bugreport.
gmake[2]: *** [CMakeFiles/seqwish.dir/src/links.cpp.o] Error 1
Preprocessed source stored into /tmp/ccQ8n05M.out file, please attach this to your bugreport.
gmake[2]: *** [CMakeFiles/seqwish.dir/src/compact.cpp.o] Error 1
gmake[1]: *** [CMakeFiles/seqwish.dir/all] Error 2
gmake: *** [all] Error 2

The complete output of cmake and preprocessed source under /tmp/ are also attached in log.tar.gz.

Let me know how I can fix this. Thanks!

-Tony

joyeuxnoel8 commented

Just to make it clear, I was trying to compile on CentOS Linux.

joyeuxnoel8 commented

It turns out my latest version of g++ is not under /usr/bin. Setting the correct path for CC and CXX in ~/.bashrc like this,

export CC=/usr/usc/gnu/gcc/8.2.0/bin/gcc
export CXX=/usr/usc/gnu/gcc/8.2.0/bin/g++

, resolves the problem. Sorry to bug you with this trivial question!

ekg commented