ekg/seqwish

Issues

• interpretation of bacteria pangenome graphs

  #123 opened 3 months ago by jianshu93
  6

• CPU utilization is higher than set with --threads argument

  #124 opened 3 months ago by nsmlzl
  0

• please add a possibility to restrict the disk usage of seqwish

  #122 opened 10 months ago by subwaystation
  0

• Genome graph induced from wfmash+seqwish is still biased

  #121 opened a year ago by yihangs
  3

• Does seqwish supports output with nodes as single characters?

  #120 opened a year ago by YX-Xiang
  2

• Building Seqwish on macOS

  #117 opened a year ago by kojix2
  0

• Dead end nodes of 0 length

  #116 opened a year ago by casper-schutte
  1

• error: no member named 'parallel' in namespace 'ips4o'

  #114 opened a year ago by yurivict
  2

• Compilation errors GCC v13.1

  #112 opened 2 years ago by subwaystation
  0

• Seqwish graph underaligned

  #111 opened 2 years ago by cgroza
  2

• abnormal alignments

  #109 opened 2 years ago by sdws1983
  16

• Differences between Seqwish and minigraph

  #65 opened 2 years ago by brettChapman
  3

• Graph to Graph Alignment

  #108 opened 2 years ago by 8banzhuan
  5

• No L or C lines in gfa from minimap2 paf

  #70 opened 2 years ago by cistarsa
  2

• What is the special meaning of this algorithm：lt_deBruijn_to_idx[((x&-x)*deBruijn64)>>58]

  #103 opened 2 years ago by Wenmj201582
  1

• How should a simple test be performed after seqwish is installed

  #100 opened 2 years ago by Wenmj201582
  3

• [Question] Is Linux ARM64 a supported architecture?

  #98 opened 2 years ago by markjens
  7

• Compilation issue - ipso::parallel is not recognized

  #101 opened 2 years ago by subwaystation
  3

• patch release for Bioconda?

  #97 opened 2 years ago by rpetit3
  2

• seqwish::compact error: found 0 overlaps for seq

  #92 opened 2 years ago by cgroza
  4

• how to avoid having a cyclic graph

  #95 opened 3 years ago by khodor14
  3

• alignments without cigars should trigger errors or warnings

  #61 opened 3 years ago by ekg
  0

• [FEATURE]: `seqwish` can emit GBZ format

  #91 opened 3 years ago by subwaystation
  0

• [FEATURE]: `seqwish` can handle agc compressed whole genome assemblies

  #90 opened 3 years ago by subwaystation
  0

• terminate called after throwing an instance of 'std::out_of_range'

  #86 opened 3 years ago by dirkjanvw
  1

• No conda package for newer versions

  #81 opened 3 years ago by Masaki-Hongo
  3

• Please release complete source code tarballs

  #52 opened 3 years ago by mr-c
  2

• seqwish output with simulated data

  #69 opened 4 years ago by egoltsman
  1

• `vg msga` quite slow with 20 1Mb genomes

  #68 opened 4 years ago by bredelings
  4

• Error processsing large PAF files from minimap2

  #67 opened 4 years ago by brettChapman
  23

• Unable to compile seqwish

  #66 opened 4 years ago by joyeuxnoel8
  3

• Clarify behaviour with softmasked sequence

  #55 opened 4 years ago by glennhickey
  2

• Using alignments from edyeet results in an edge-less graph

  #62 opened 4 years ago by egoltsman
  21

• Seqwish does not transitively align through SNPs

  #60 opened 4 years ago by glennhickey
  4

• Question: How to recover "colors" from the graph?

  #57 opened 4 years ago by phiweger
  7

• Reverse-strand alignments look messy sometimes

  #56 opened 4 years ago by glennhickey
  6

• High memory usage when using '-r 1'

  #53 opened 5 years ago by jmonlong
  1

• I can't install seqwish on any computer

  #51 opened 5 years ago by Flavia95
  2

• easy ways to speed up large parallel runs

  #46 opened 5 years ago by ekg
  0

• (core dumped) seqwish

  #36 opened 5 years ago by HaploKit
  19

• automatic docker generation

  #38 opened 5 years ago by SilasK
  1

• Tag new release and create Bioconda recipe

  #34 opened 5 years ago by heuermh
  12

• two genome comprison

  #35 opened 5 years ago by YaoZhou89
  6

• Aborted (core dumped) when building graph from 8 yeast genomes

  #30 opened 5 years ago by subwaystation
  3

• Assertion `seen_bp == accumulated_bp' failed.

  #24 opened 5 years ago by ChriKub
  3

• Length assertion exception during GFA generation.

  #28 opened 5 years ago by darcyabjones
  7

• Option for acyclic reference path

  #19 opened 5 years ago by glennhickey
  5

• seqwish should clean up after itself

  #22 opened 5 years ago by ekg
  0

• path length changes in graph construction

  #20 opened 5 years ago by ChriKub
  8

• seqwish crashes on chrom21 for 3 hgsvc samples

  #18 opened 5 years ago by glennhickey
  4