Pinned Repositories
benchmarks
biom-format
The Biological Observation Matrix (BIOM) Format Project
burrito-fillings
Application controllers for command line bioinformatics applications
Complete-Striped-Smith-Waterman-Library
conda-recipes
conda recipes for bioinformatic tools like blast+, infernal, etc.
deblur
deblurring
OTU-clustering
Scripts for benchmarking and comparison of short read OTU clustering tools available in QIIME
sortmedna
Development version of SortMeDNA
sortmerna
This is ongoing development of SortMeRNA. For the latest release, see http://bioinfo.lifl.fr/RNA/sortmerna/.
ekopylova's Repositories
ekopylova/OTU-clustering
Scripts for benchmarking and comparison of short read OTU clustering tools available in QIIME
ekopylova/sortmerna
This is ongoing development of SortMeRNA. For the latest release, see http://bioinfo.lifl.fr/RNA/sortmerna/.
ekopylova/sortmedna
Development version of SortMeDNA
ekopylova/benchmarks
ekopylova/biom-format
The Biological Observation Matrix (BIOM) Format Project
ekopylova/burrito-fillings
Application controllers for command line bioinformatics applications
ekopylova/Complete-Striped-Smith-Waterman-Library
ekopylova/conda-recipes
conda recipes for bioinformatic tools like blast+, infernal, etc.
ekopylova/deblur
ekopylova/deblurring
ekopylova/distance-method
Python implementation of the Distance Method HGT search algorithm
ekopylova/emp
Data, code and analysis results for the Earth Microbiome Project.
ekopylova/emperor
Emperor a tool for the analysis and visualization of large microbial ecology datasets
ekopylova/hgt_analysis
Scripts for HGT analysis
ekopylova/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
ekopylova/NINJA-OPS
Ninja Is Not Just Another OTU Picking Solution
ekopylova/OrthoFinder
Accurate inference of orthologous gene groups made easy. "OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthologous gene group inference accuracy"
ekopylova/phylomizer
PhylomeDB automated pipeline for reconstructing high-quality phylogenetic tree
ekopylova/qiime
Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests
ekopylova/qiime-deploy
Tool to easily install QIIME on Linux systems
ekopylova/qiime-deploy-conf
configuration files to be used with the qiime-deploy packages
ekopylova/scikit-bio
Core objects, functions and statistics for working with biological data in Python.
ekopylova/script_bin
A collection of potentially useful scripts
ekopylova/short-read-tax-assignment
A repository for storing code and data related to a systematic comparison of short read taxonomy assignment tools
ekopylova/tcga
TCGA analysis
ekopylova/tcga-1
Microbial analysis in TCGA data
ekopylova/WGS-HGT
Workflow for detecting genome-wide horizontal gene transfers