/deblur

Primary LanguagePythonBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

Deblur

Build Status Coverage Status

Deblur is a greedy deconvolution algorithm based on known read error profiles.

Code Development Note

Some of the code in the package deblur has been derived from QIIME. The contributors to these specific QIIME modules have granted permission for this porting to take place and put under the BSD license.

Install

python setup.py install

Example usage

The input to deblur workflow is a demultiplexed FASTA file. The deblur algorithm is designed to work on individual samples.

deblur workflow all_samples.fna db.fna output.biom