/enzyme-cost-minimization

Code for flux-specific enzyme cost calculations

Primary LanguageHTMLGNU General Public License v2.0GPL-2.0

Code and data for Enzyme Cost Minimization

Wolfram Liebermeister (2014)

Dependencies: For some of the MATLAB functions, the following MATLAB toolboxes must be installed

o Metabolic Network Toolbox (https://github.com/liebermeister/mnt)

o SBMLtoolbox (http://sbml.org/Software/SBMLToolbox)

o SBtab toolbox (https://github.com/liebermeister/sbtab-matlab)

o Tensor toolbox (http://www.sandia.gov/~tgkolda/TensorToolbox/index-2.5.html)

o efmtool (http://www.csb.ethz.ch/tools/efmtool)

o DERIVESTsuite (http://www.mathworks.com/matlabcentral/fileexchange/13490-adaptive-robust-numerical-differentiation)

Contact: wolfram.liebermeister@gmail.com