Pinned Repositories
component-contribution
Standard reaction Gibbs energy estimation for biochemical reactions
equilibrator
equilibrator-api
A command-line version of eQuilibrator with minimal dependencies
metabolic_modelling
milo-lab
Automatically exported from code.google.com/p/milo-lab
ms-tools
A collection of scripts for analyzing MS data
optslope
A toolbox for running OptSlope, an algorithm for metabolic engineering
proteomaps
Scripts and data for generating proteome treemaps (AKA proteomaps)
replace-animals
A collaborative effort to investigate the advantage of replacing an animal-based diet with a plant-based one
small-molecule-regulation
eladnoor's Repositories
eladnoor/component-contribution
Standard reaction Gibbs energy estimation for biochemical reactions
eladnoor/equilibrator
eladnoor/small-molecule-regulation
eladnoor/milo-lab
Automatically exported from code.google.com/p/milo-lab
eladnoor/ms-tools
A collection of scripts for analyzing MS data
eladnoor/equilibrator-api
A command-line version of eQuilibrator with minimal dependencies
eladnoor/metabolic_modelling
eladnoor/replace-animals
A collaborative effort to investigate the advantage of replacing an animal-based diet with a plant-based one
eladnoor/carbofix
A algorithm for automatic design of carbon fixation cycles
eladnoor/Dynamic-labeling-cascade
eladnoor/enzyme-cost
Kinetic modeling of pathway fluxes for estimating the specific cost in enzymes for sustaining a given flux
eladnoor/enzyme-cost-minimization
Code for flux-specific enzyme cost calculations
eladnoor/equilibrator-kbase
A KBase module for the Component Contribution method (AKA eQuilibrator)
eladnoor/equilibrator3
eladnoor/examples
eladnoor/flux-enzyme-cost-minimization
Explore optimal metabolic states by screening of metabolic flux distributions and computing their enzyme cost via kinetic models
eladnoor/flux-html-report
A python script that creates an HTML output file for FBA results
eladnoor/kvivo_max
eladnoor/optlang
optlang - sympy based mathematical programming language
eladnoor/pkasolver
toolkit for prediction pKa values of small molecules via graph convolutional networks
eladnoor/PMFA
Principal Metabolic Flux Mode Analysis
eladnoor/pulsefeeding-analysis
MATLAB and Python code used for analysis and figure generation of E. coli pulsing/starvation project
eladnoor/SBtab
SBtab - Table format for Systems Biology:
eladnoor/sbtab-matlab
Matlab functions for SBtab format
eladnoor/sloppy
A cobrapy-based library that finds knockout and carbon-source combinations that enforce flux-biomass coupling
eladnoor/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
eladnoor/stFBA
Implementation of the st-FBA algorithm, dependent on COBRApy
eladnoor/sysbio2016
Proceedings and examples accompanying the Systems Biology Course in Innsbruck, February 2016
eladnoor/sysbio2018
Scripts for the blackboard session in the SysBio 2018 conference in Innsbruck
eladnoor/thermodynamic_feasbile_flux