eladnoor/equilibrator

Issues

• enzyme stored-reactions involving template compounds should be removed

  #51 opened 6 years ago by eladnoor
  0

• "glycolate" returns "glycol"

  #49 opened 7 years ago by flamholz
  2

• float coefficients causes strange behavior

  #47 opened 7 years ago by eladnoor
  1

• reactions no longer link to catalyzing enzymes?

  #37 opened 7 years ago by flamholz
  1

• reinstate reverse lookup of enzyme names from reactions

  #48 opened 7 years ago by flamholz
  1

• Searching for "O2" does not return oxygen (only superoxide)

  #43 opened 7 years ago by eladnoor
  0

• incorrect images

  #38 opened 8 years ago by flamholz
  10

• incorrect images for dipeptides

  #45 opened 7 years ago by flamholz
  1

• Documentation (sphinx) improvements

  #46 opened 7 years ago by eladnoor
  0

• Add API for dG'0 of reactions given in KEGG IDs

  #26 opened 7 years ago by eladnoor
  6

• Add visible link to the component-contribution repository

  #44 opened 7 years ago by eladnoor
  0

• incorrect MEcPP formula

  #42 opened 8 years ago by flamholz
  1

• Terminal amide groups depicted wrong

  #40 opened 8 years ago by eladnoor
  0

• Duplicate compounds

  #41 opened 8 years ago by eladnoor
  1

• Stoichiometric coefficients missing from main formula

  #36 opened 8 years ago by eladnoor
  0

• General search quality improvements

  #35 opened 8 years ago by flamholz
  0

• arren requests: pathway graphs

  #18 opened 8 years ago by flamholz
  3

• "structure not available" image is not working properly

  #34 opened 8 years ago by eladnoor
  0

• migrate to Django 1.10

  #28 opened 8 years ago by eladnoor
  0

• Consolidate all ammoniums into one

  #32 opened 8 years ago by eladnoor
  0

• Split views.py into several files under /views/

  #30 opened 8 years ago by eladnoor
  0

• Pathway analysis fails when compound name begins with a number

  #31 opened 8 years ago by flamholz
  2

• Handle dG error in MDF analysis?

  #29 opened 8 years ago by flamholz
  0

• how to change weizmann URL to point to AWS

  #11 opened 8 years ago by flamholz
  1

• figure out how to get elad admin privileges on AWS

  #4 opened 8 years ago by flamholz
  0

• Update the downloadable reaction flatfiles

  #27 opened 8 years ago by eladnoor
  0

• make sure refs are in order pre-launch

  #25 opened 8 years ago by flamholz
  0

• Document Apache integration

  #5 opened 8 years ago by flamholz
  2

• Integrate fast_search branch into master

  #6 opened 8 years ago by flamholz
  2

• arren requests: download TSV and open results at same time (pathway analysis)

  #21 opened 8 years ago by flamholz
  1

• default ionic_strength = 0.25 M?

  #23 opened 8 years ago by flamholz
  2

• give dGm on the pathway results

  #16 opened 8 years ago by flamholz
  1

• arren requests: override reaction dGs for pathway analysis

  #19 opened 8 years ago by flamholz
  11

• update default bounds to match those used in plos paper.

  #20 opened 8 years ago by flamholz
  1

• arren requests: cofactors and reactants explicitly separated on concentration graph

  #22 opened 8 years ago by flamholz
  0

• eQuilibrator server often crashes at setParseAction

  #2 opened 8 years ago by flamholz
  3

• mM units on pathway analysis page?

  #15 opened 8 years ago by flamholz
  2

• show metabolites with non-zero shadow prices in diff color

  #17 opened 8 years ago by flamholz
  1

• footer is not centered on search error page.

  #9 opened 8 years ago by flamholz
  2

• Limit range of pH and I plots

  #14 opened 8 years ago by eladnoor
  2

• Decide what to do about JSON API

  #12 opened 8 years ago by flamholz
  2

• typos in reaction search doesn't self-correct like it used to

  #7 opened 8 years ago by flamholz
  2

• Fix download links

  #13 opened 8 years ago by eladnoor
  3

• make equilibrator 2.1 logo

  #3 opened 8 years ago by flamholz
  3

• make matching tests pass again

  #8 opened 8 years ago by flamholz
  1

• delete old unused matching code

  #10 opened 8 years ago by flamholz
  1

• Website is not working

  #1 opened 8 years ago by WegrzynAB
  0