eLife Sciences

avian-immunity

Scripts for studying the evolution of immune genes across birds.

CellsMD3D

Ciliberti_Elife2018_RealTimeReplay

HBPcollab

hetionet

Hetionet: an integrative network of disease

immuneTopography

Analyze topography of tumor-infiltrating immune cells in histological images (QuPath/Matlab)

InferentialMistakes

ProteinMotifRBM

Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox

seqNMF

An algorithm for unsupervised discovery of sequential structure

torord

Repository for the cardiac model ToR-ORd

elifesciences-publications/Ageing2019

Data processing, pipelines and analytical code for the thymus ageing manuscript

elifesciences-publications/EVcouplings

Evolutionary couplings from protein and RNA sequence alignments

elifesciences-publications/flu-forecasting

Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution

elifesciences-publications/FreelyExpandingTissues

Analysis scripts for research on freely expanding epithelia

elifesciences-publications/VKOR

Analysis pipeline for manuscript "Multiplexed measurement of variant abundance and activity reveals VKOR topology, active site and human variant impact."

elifesciences-publications/2019-11-allelic_bias_in_fire_ant_supergene

elifesciences-publications/2020_Sorn_Elife

elifesciences-publications/3-step-Map-Aligment-Model-2020

elifesciences-publications/arbitration

Code supporting the paper for "Neural Arbitration between Social and Individual Learning Systems"

elifesciences-publications/BarrelEmerge

Emergence of whisker barrels with modified Karbowski-Ermentrout-like axon branching population model

elifesciences-publications/bond_length_analysis

elifesciences-publications/cfNA

elifesciences-publications/coexpression-transEQTL

Analysis source code for co-expression trans-eQTL analysis

elifesciences-publications/Colnaghi-Lane-Pomiankowski-2020

elifesciences-publications/CyclicDominance

elifesciences-publications/isecc

Icosahedral Subparticle Extraction & Correlated Classification

elifesciences-publications/KrShadowEnhancerCode

Code for analyzing transcriptional traces and generating figures in Waymack, et al.,

elifesciences-publications/Leave-one-out-LOESS

elifesciences-publications/MemoryPreparationSubspace

elifesciences-publications/ontogenyofhunting_pub

Code associated with the article "Learning steers the ontogeny of an efficient hunting sequence in zebrafish larva."

elifesciences-publications/Priming-Skin-to-Regenerate-by-Inducing-Lef1-Expression-in-Fibroblasts-

elifesciences-publications/pub-2020elife

Fiji macros associated with processing data from Chen et al., eLife 2020.

elifesciences-publications/RSVHouseholdModel

Julia 0.6 code for running the RSV Household transmission model (see https://www.biorxiv.org/content/10.1101/569335v1.abstract for preprint).

elifesciences-publications/sc_binary_splicing

Dataset analysis, simulations and figures from single cell splicing paper

elifesciences-publications/SeasonalEcosystem

Code and data for the article "Nutrient levels and trade-offs control diversity in a model seasonal ecosystem"

elifesciences-publications/single_cell_blood_flow_2

elifesciences-publications/Six-Viruses-Temp

Mechanistic, trait-based R0 models for transmission of 6 mosquito-borne viruses (West Nile virus, Eastern and Western Equine Encephalitis viruses, St. Louis Encephalitis virus, Sindbis virus, and Rift Valley Fever virus), and validations with human case data for WNV, SLEV, and EEEV

elifesciences-publications/T5DMS_data_analysis

Data and scripts for DMS of TRIM5

elifesciences-publications/timshel-2020

Code to reproduce analysis and figures for 'Mapping heritability of obesity by cell types' (Timshel, bioRxiv 2020)

elifesciences-publications/Zcwpw1

Project investigating the meiotic functions of Zcwpw1