elimuinformatics/vcf2fhir

Issues

• add vcf2fhir sample_position parameter

  #112 opened a year ago by rhdolin
  0

• update sequence-phase-relationship-cs

  #111 opened a year ago by rhdolin
  0

• Conversion not returning all variant entries

  #110 opened 2 years ago by clake-deloitte
  4

• Question: how to scale up vcf2fhir

  #108 opened 2 years ago by mad-scientist-in-training
  3

• Getting Wheel error for command pip install vcf2fhir

  #109 opened 2 years ago by pankajsurti
  3

• vcf2fhir fails to install

  #107 opened 2 years ago by mad-scientist-in-training
  2

• Resource Warning due to the PyVCF3 library

  #62 opened 4 years ago by Rohan-cod
  1

• Installation succeeds; "import vcf2fhir" fails

  #102 opened 2 years ago by bwalsh
  2

• Incorrect output when ALT is a multi-valued list

  #96 opened 3 years ago by rhdolin
  0

• Create and add Project logo

  #95 opened 3 years ago by srgothi92
  0

• Add badges in Readme for higher visibility of project

  #94 opened 3 years ago by srgothi92
  0

• Add Support for clinical annotations

  #88 opened 3 years ago by Rohan-cod
  0

• genetic variant assessment should be 'absent' when GT=0/0

  #90 opened 3 years ago by Yun-00
  3

• Searching for variants in Alt contigs

  #12 opened 4 years ago by rhdolin
  2

• vcf2fhir for structural variants

  #11 opened 3 years ago by rhdolin
  0

• Setup Dependabot for dependency updates

  #84 opened 3 years ago by srgothi92
  0

• Release a new version 0.0.17 with proper Changelog updates

  #34 opened 3 years ago by srgothi92
  1

• Shift the build process to PEP-517

  #18 opened 3 years ago by rhdolin
  7

• Deploy vcf2fhir on the bioconda channel

  #83 opened 3 years ago by Rohan-cod
  0

• Add genomic source class to variant observations

  #63 opened 3 years ago by rhdolin
  4

• Extract simple variants based on conversion region

  #74 opened 3 years ago by rhdolin
  1

• conversion between 0-based and 1-based coordinate systems

  #73 opened 3 years ago by rhdolin
  0

• Add support for multi-sample VCFs

  #37 opened 3 years ago by rhdolin
  5

• Conversion method should return the converted data, and rely on another method to write data onto a file

  #20 opened 4 years ago by rhdolin
  3

• Error when conversion region wasn't studied

  #66 opened 3 years ago by rhdolin
  1

• Support vcf2fhir on windows !

  #70 opened 3 years ago by srgothi92
  0

• Conform to HL7 find-subject-variants output

  #14 opened 3 years ago by rhdolin
  4

• Simplifying the code

  #52 opened 4 years ago by abhishek-jain-1999
  9

• Update Documentation

  #49 opened 4 years ago by srgothi92
  5

• To resolve Resource Warning : unclosed file

  #58 opened 4 years ago by abhishek-jain-1999
  32

• GitHub Action to build and publish Python package to PyPI

  #60 opened 4 years ago by Rohan-cod
  3

• Meet the GitHub community checklist for public repository

  #41 opened 4 years ago by srgothi92
  5

• Remove 'Human reference sequence assembly version' component from variant observation

  #36 opened 4 years ago by rhdolin
  5

• Refactor Idiomatic python

  #35 opened 4 years ago by srgothi92
  0

• Refactor tests to separate Unit tests and Integration Tests and add more Unit tests

  #33 opened 4 years ago by srgothi92
  1

• query liftover

  #13 opened 4 years ago by rhdolin
  2

• Data Type validation for 'has_tabix' and 'ratio_ad_dp'.

  #30 opened 4 years ago by Rohan-cod
  0

• Setup Continuos Integration (CI)

  #32 opened 4 years ago by srgothi92
  0

• Graceful handling of unknown chromosome

  #19 opened 4 years ago by rhdolin
  0

• mitochondrial DNA homoplasmic vs. heteroplasmic assignment

  #16 opened 4 years ago by rhdolin
  0

• Fatal error if FORMAT.PS is missing

  #25 opened 4 years ago by rhdolin
  0

• Should not exclude records where FILTER=PASS

  #26 opened 4 years ago by rhdolin
  0

• Gene and disease description

  #9 opened 4 years ago by apaytuvi
  1

• ModuleNotFoundError: No module named 'Cython'

  #1 opened 4 years ago by LondheShubham153
  0