Support for exome interval files
oskarvid opened this issue · 2 comments
oskarvid commented
The current interval files are only for germline variant calling.
oskarvid commented
I have made a working prototype for custom interval lists, the user can supply any interval list format supported by GATK SplitIntervals and it will get split up into a predefined number of sub intervals for scatter gather parallelization of HaplotypeCaller.
oskarvid commented
This has accidentally been prematurely implemented in release 1. Closing for now.