/vcf_filtering

Filter a VCF to discard false positive variants

Primary LanguagePythonApache License 2.0Apache-2.0

Filtering a VCF

This repo contains the code and workflows used to identify the false positive variants in a VCF file.

For the identification of spurious variants I use a process based on supervised machine learning (ML) using a VCF with highly confident sites to train the model.

More documentation can be found here.

DOI