elowy01

fasta_parser

Small package used to parse a file in the Fasta format

htslib_howto

Collection of simple C scripts for parsing vcf or bam files using the htslib C library. These scripts can be used as the starting point for more complex scripts

nf_genomics_pipelines

This repo contains pipeline implemented using the nextflow workflow management system for the analysis of genomics data

PYTHON_NOTES

Repo containing notes and snippets on how to achieve different data analyst and coding tasks using Python such as Logistic Regression, Machine Learning etc...

vcf_filtering

Filter a VCF to discard false positive variants

FOREX

Python library to handle different kind of operations with the OANDA API

igsr_analysis

This repo contains code that is relevant for the analysis (Mapping, BAM qc, Variant Calling, Filtering etc...) of IGSR data

igsr_archive

Contains code to perform several operations involving files in the IGSR (1000 genomes) FTP archive

elowy01/vcf_filtering

Filter a VCF to discard false positive variants

elowy01/PYTHON_NOTES

Repo containing notes and snippets on how to achieve different data analyst and coding tasks using Python such as Logistic Regression, Machine Learning etc...

elowy01/variant_filtering

supervised machine learning to filter a VCF generated using BCFTools

elowy01/An-Introduction-to-Bayesian-Inference-in-PyStan

Code for blog post on Bayesian inference in PyStan

elowy01/C

This repo contains my projects in the C language

elowy01/conda_environments

This repo contains different .yml files and are used for creating the different conda envs that I use on a day-to-day basis

elowy01/CoverageView

Bioconductor package

elowy01/CPP_NOTES

This repo contains notes on different aspects of CPP that I have learned while doing various data analysis tasks. This repository is going to be used as a reference that I can use in the future.

elowy01/data_analysis

Mainly R script to do data analysis

elowy01/demo_repo

demo repo git course

elowy01/elowy01.github.io

elowy01/gca_1000genomes_website

The 1000genomes website

elowy01/gca_elasticsearch

Tools for elasticsearch

elowy01/handson-ml

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

elowy01/igsr_analysis

This repo contains code that is relevant for the analysis (Mapping, BAM qc, Variant Calling, Filtering etc...) of IGSR data

elowy01/learning-terraform-3087701

This repo is for the Linkedin Learning course: Learning Terraform

elowy01/LogisticRegression

Logistic regression from scratch in Python

elowy01/nark-bone

Core utilities of nark library

elowy01/nf-core-testworkflow

First workflow

elowy01/PerlScripts

Set of Perl scripts used in different Bioinformatics Projects

elowy01/python-test-calculator

test

elowy01/sphinx

Main repository for the Sphinx documentation builder

elowy01/STATS

Ipython notebooks and misc of things related to statistics

elowy01/test

test git

elowy01/useful_dockerfiles

This repo contains useful docker files to containerise dependencies

elowy01/vcflib

a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

elowy01/ZigZag

Python library for identifying the peaks and valleys of a time series.