Pinned Repositories
BASALT
Breast cAncer Subtype AnaLysis Tool
BioSentVec
BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine
elastic-medline
Creating an elasticsearch instance of MEDLINE
JGI-Data-Week-2019
Constructing an academic knowledge graph and recommendation engine
neo4j-build-pipeline
A Snakemake and Docker based pipeline to create a Neo4j graph.
SCRAN
Single Cell Rna-seq ANalysis
SCUBAT
Scaffolding Contigs Using Blat And Transcripts
epigraphdb-graph
Data integration and build pipeline for EpiGraphDB Neo4j graph
MELODI-Presto
A fast and programmatic MELODI
elswob's Repositories
elswob/SCUBAT
Scaffolding Contigs Using Blat And Transcripts
elswob/neo4j-build-pipeline
A Snakemake and Docker based pipeline to create a Neo4j graph.
elswob/JGI-Data-Week-2019
Constructing an academic knowledge graph and recommendation engine
elswob/BASALT
Breast cAncer Subtype AnaLysis Tool
elswob/elastic-medline
Creating an elasticsearch instance of MEDLINE
elswob/SCRAN
Single Cell Rna-seq ANalysis
elswob/BioSentVec
BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
elswob/deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine
elswob/dna-seq-varlociraptor
Variant detection with Delly and Freebayes, followed by statistical assessment with Varlociraptor
elswob/ga4gh-variant-sim
Simulations for benchmarking large-scale variant stores
elswob/glow
An open-source toolkit for large-scale genomic analysis
elswob/graph-view
elswob/Hh
Code for data processing and manuscript figures
elswob/medline
Create a basic local medline instance for high throughput informatics
elswob/pure-comp
elswob/rna-seq-pipe
Pipeline for processing RNA-Seq data
elswob/rnaseq-nf
A proof of concept of RNAseq pipeline
elswob/semrep
elswob/UoB-Orcid-2019
University of Bristol people and publications, extracted via Orcid and Pure in 2019