emilydolson
Assistant professor studying evolution in cancer and digital organisms and building tools to do so. Views my own.
@DolsonLab, Michigan State University
Pinned Repositories
alife-phylogeny-tutorial
CSE-431-FS-2020
Code and course material for MSU's "CSE 431: Algorithm Engineering"
d3-emscripten
Use d3.js from the comfort of C++! C++ wrapper for d3.js via emscripten.
Empirical
A library of tools for scientific software development, with emphasis on also being able to build web interfaces using Emscripten.
fitness_landscape_visualizations
Visualizing fitness landscapes with WebGL and WebVR.
force-cover
Modify C++ test coverage reports to show uninstantiated templates
MABE2
Version 2 of the Modular Agent-Based Evolver
phylotrackpy
Python phylogeny tracker for in silico evolution experiments
python-red-black-trees
Red-black tree implementation in Python
todoist-fibery-sync
Horrible code to sync my fibery setup with my todoist set-up
emilydolson's Repositories
emilydolson/python-red-black-trees
Red-black tree implementation in Python
emilydolson/force-cover
Modify C++ test coverage reports to show uninstantiated templates
emilydolson/phylotrackpy
Python phylogeny tracker for in silico evolution experiments
emilydolson/alife-phylogeny-tutorial
emilydolson/CSE-830-SS-23
emilydolson/chemical-ecology
emilydolson/CSE-830-SS-22
emilydolson/Empirical
A library of tools for scientific software development, with emphasis on also being able to build web interfaces using Emscripten.
emilydolson/intermediate_cpp
emilydolson/lex-prob-is-np-hard
Code and materials for the paper "Calculating Lexicase Selection Probabilities is NP-Hard
emilydolson/phylogeny_wrangling_tools
Phylogeny wrangling scripts that I don't expect to be generally useful enough for the alife-data-standards repos
emilydolson/zotero-fibery-sync
Tool for syncing data between Zotero and Fibery
emilydolson/MABE2
Version 2 of the Modular Agent-Based Evolver
emilydolson/ALIFE-2024-DeNovoMutualism
emilydolson/avida-empirical
Experimental mash-up of Avida and Empirical - not recommended for general use
emilydolson/breathe
ReStructuredText and Sphinx bridge to Doxygen
emilydolson/CSE-431-FS-22
Course website for CSE 431: Algorithm Engineering Fall 2022
emilydolson/CSE-431-FS-23
emilydolson/CV
Mostly just testing out Overleaf GitHub integration, but this might turn out to be useful
emilydolson/DirectionalNK
emilydolson/ec_ecology_toolbox
General purpose tools for studying ecology in evolutionary computation
emilydolson/emilydolson
emilydolson/fishpoo
A study of gut microbial communities of Tanganyikan cichlids
emilydolson/lexicase-tradeoffs
A library for calculating the probabilities of selection under lexicase selection
emilydolson/lineage_viz_tool
A tool for visualizing lineages stored in a standards-compliant format
emilydolson/MFM
Movable Feast Machine C++ reference implementation and simulator
emilydolson/phylodiversity-metrics-in-EC-GPTP-2021
Measuring phylogenetic diversity metrics in evolutionary computation
emilydolson/phylogeny-informed-evaluation
emilydolson/SymbulationEmp
Symbulation is a software model of symbiosis built using Empirical
emilydolson/zotero-fibery-sync-api
A Fibery integration for synchronizing Zotero libraries to Fibery