NK Models [1] are used in simulating biological systems. This project simulates the evolutionary behavior of a viral system using an NK model where the system is given environmental shocks of varying degrees.
The repository contains a self-contained project that can be imported into Eclipse (Juno). The main program is Simulation.java. Inputs can be given as described in resources/input.txt.
[1] S. Kauffman and S. Levin, Towards a General Theory of Adaptive Walks on Rugged Landscapes, J. Theor. Biol (1987) 128, 11-45