emvolz/treedater

Issues

• Generate the tmrca of every node

  #23 opened a month ago by Dhihram
  5

• Error in if (cv > 1) { : missing value where TRUE/FALSE needed message

  #22 opened 2 months ago by Dhihram
  4

• Error when providing multiple initial values for mutation rate

  #20 opened 5 months ago by daileyco
  0

• outlierTips() always prints some output to console

  #19 opened 3 years ago by stitam
  0

• Error in double(nm * nm) : vector size cannot be NA

  #18 opened 3 years ago by brmagalis
  2

• Error when automatically selecting initial mean rates

  #15 opened 5 years ago by emvolz
  2

• rootToTipRegressionPlot should have option to print tip labels

  #8 opened 4 years ago by emvolz
  1

• Units for meanRateLimits

  #17 opened 5 years ago by ksw9
  2

• Missing dates

  #14 opened 5 years ago by slvrshot
  7

• only sampling year

  #4 opened 6 years ago
  6

• How to add dates if they are not already on tip labels or can I import them from a csv file?

  #13 opened 5 years ago by slvrshot
  1

• Suggest harmonicmeanp version > 3

  #12 opened 5 years ago by emvolz
  1

• Can produce negative branch lengths when estimating sample times event when temporalConstraints is TRUE

  #6 opened 5 years ago by emvolz
  1

• Raise informative error message when boot(.) tres argument does not match td argument

  #11 opened 5 years ago by emvolz
  1

• *boot* does not show progress when quiet=FALSE

  #9 opened 5 years ago by emvolz
  1

• Provide informative warning & suggestions if bootstrap intervals do not cover pseudo-ml

  #10 opened 5 years ago by emvolz
  0

• outlierLineages should provide node number in addition to edge index

  #7 opened 5 years ago by emvolz
  0

• meanRateLimits not obeyed in output with relaxed clock model

  #5 opened 5 years ago by emvolz
  0

• sts

  #3 opened 6 years ago
  1

• TODO

  #2 opened 7 years ago by emvolz
  0

• Enhancements?

  #1 opened 8 years ago by sdwfrost
  1