epi2me-labs/wf-metagenomics

Issues

• minimap2 custom database

  #119 opened 3 months ago by Anenovaes
  0

• Is it possible to access an index from a remote server using EPI2ME?

  #118 opened 3 months ago by timregan
  1

• A table matching sequences with the taxonomic assignment

  #100 opened 4 months ago by irc47
  4

• Error running real time pipeline

  #116 opened 4 months ago by sarah-buddle
  4

• Customize the workflow

  #117 opened 4 months ago by Harper19
  1

• wf-metagenomics (run error)

  #114 opened 4 months ago by YoungMunLEE
  2

• Adding UNITE ITS database to the pre-built options

  #115 opened 4 months ago by jdiazsupsi
  1

• Adding custom seqs to existing databases

  #89 opened 4 months ago by annabel-dekker
  2

• Process `fastcat ` terminated with an error exit status (125)

  #102 opened 4 months ago by aggath
  7

• ERROR ~ Validation of pipeline parameters failed! (fastq/bam)

  #113 opened 5 months ago by LucyNanopore
  1

• ERROR ~ Validation of pipeline parameters failed! (fastq/bam)

  #112 opened 5 months ago by LucyNanopore
  3

• There is no progression on the analysis/process

  #111 opened 5 months ago by CurryMuthu
  4

• Combining PlusPFP and EuPathDB46 databases and adding custom sequences

  #105 opened 5 months ago by msubirana
  1

• Duration of the Analysis using Metagenomic - Kraken2 (Standard 8)

  #110 opened 5 months ago by CurryMuthu
  1

• Turn off fastcat?

  #109 opened 5 months ago by katievigil
  3

• error exit status (255)

  #108 opened 5 months ago by katievigil
  5

• Error: "Please make sure that the ref2taxid matches the reference."

  #107 opened 5 months ago by plycrsk
  1

• Minimap2 custom database

  #80 opened 6 months ago by EsbergA
  12

• min_percent_identity and min_ref_coverage not available in v2.10.0?

  #106 opened 5 months ago by plycrsk
  0

• no such variable : ref2taxid_file

  #91 opened 6 months ago by Aline-Git
  5

• Fastq file format

  #104 opened 5 months ago by RarltyOne
  1

• I have problem with fastq format.

  #103 opened 5 months ago by RarltyOne
  1

• Classification of ARGs

  #95 opened 5 months ago by lukebsnell
  2

• Ran out of Memory Even When Using Memory Mapping

  #101 opened 6 months ago by Pompidor
  3

• minimap error only when sample sheet is used

  #81 opened 6 months ago by irc47
  7

• Error message about Matplotlib and anytree

  #83 opened 9 months ago by weishwu
  4

• Process requirement exceeds available memory

  #78 opened 8 months ago by joyleng
  9

• invalid Kingdom taxonomic_rank option

  #98 opened 6 months ago by RunpengLuo
  2

• AMR

  #99 opened 6 months ago by SilSanGon
  3

• Error running wf with different Kraken database

  #94 opened 6 months ago by mishkb
  6

• Angling lables on total read count bar chart

  #97 opened 6 months ago by irc47
  4

• Proxy setting

  #90 opened 6 months ago by anditg
  4

• Ran out of Memory Even When Using Memory Mapping

  #92 opened 6 months ago by peradastra
  3

• License for epi2me workflow repos

  #96 opened 6 months ago by abhimalatpure
  1

• Color Selection for Bar Charts

  #88 opened 8 months ago by irc47
  3

• HTML Report - Taxonomy graph does not display percentages of each species

  #85 opened 6 months ago by lhuang3s
  3

• Error - kraken_pipeline:makeReport - Exit status 137

  #93 opened 7 months ago by RunpengLuo
  2

• Is it possible to use EuPathDB46 as a db?

  #86 opened 7 months ago by msubirana
  6

• Trims off adapter sequences

  #87 opened 9 months ago by aimirza
  1

• Input file structure and file type

  #84 opened 8 months ago by joyleng
  13

• reference table

  #79 opened 8 months ago by HannahBenisty
  1

• Error: Could not load abundance_tables due to missing module anytree

  #82 opened 9 months ago by weishwu
  1

• `kraken_pipeline:makeReport` fails when using --amr option - [ Plotter ] Cannot correct axis labels in complicated scenarios.

  #77 opened 9 months ago by eparisis
  14

• taxonomy in the report

  #75 opened 10 months ago by HannahBenisty
  5

• non-assigned reads

  #76 opened a year ago by HannahBenisty
  8

• Trouble running a custom Kraken2 DB

  #72 opened a year ago by nataliering
  7

• pipeline hangs on client/server

  #71 opened a year ago by jagos01
  6

• html report - read summary

  #74 opened a year ago by HannahBenisty
  12

• Please delete!

  #73 opened a year ago by seanmsjkim
  0

• How to export diversity table not from the html?

  #70 opened a year ago by msubirana
  4