Computing for Epidemiology
A repository for tools, web apps and data for computational epidemiology brought to you by the Lofgren Lab (Washington State University)
Pullman, WA
Pinned Repositories
AnalysisInEpi
Repository for WSU VET_PATH 571-02, Spring 2019
chg_bathing
Code Repository for 'Estimating the Per-Application Effectiveness of Chlorhexidine Gluconate and Mupirocin in Methicillin-resistant Staphylococcus aureus Decolonization in Intensive Care Units'
COVID19-Jails
A repository for the code from 'The Epidemiological Implications of Jails for Community, Corrections Officer, and Incarcerated Population Risks from COVID-19'
COVIDstuff
EpiSpring21
Course Repository for VetPath 571, Spring 2021
lab_documents
Lofgren Lab Guidelines, Resources and other Administrative Information
macbeth
ModelingID
Repository for WSU VET_PATH 571-03, Spring 2018
SER50_Workshop
Slides and Code for the System Science for Epidemiologic Research
Zeke
Zeke: The Zombie Epidemic Modeling Platform
Computing for Epidemiology's Repositories
epimodels/Zeke
Zeke: The Zombie Epidemic Modeling Platform
epimodels/COVID19-Jails
A repository for the code from 'The Epidemiological Implications of Jails for Community, Corrections Officer, and Incarcerated Population Risks from COVID-19'
epimodels/lab_documents
Lofgren Lab Guidelines, Resources and other Administrative Information
epimodels/macbeth
epimodels/AnalysisInEpi
Repository for WSU VET_PATH 571-02, Spring 2019
epimodels/ModelingID
Repository for WSU VET_PATH 571-03, Spring 2018
epimodels/SER50_Workshop
Slides and Code for the System Science for Epidemiologic Research
epimodels/chg_bathing
Code Repository for 'Estimating the Per-Application Effectiveness of Chlorhexidine Gluconate and Mupirocin in Methicillin-resistant Staphylococcus aureus Decolonization in Intensive Care Units'
epimodels/COVIDstuff
epimodels/EpiSpring21
Course Repository for VetPath 571, Spring 2021
epimodels/Metapopulation_MRSA
Code Repository for "Population Structure Drives Differential Methicillin-resistant Staphylococcus aureus Colonization Dynamics"
epimodels/academic-kickstart
Easily create a beautiful website using Academic and Hugo
epimodels/contactchange
Code repository "Bias Induced by Post Randomization Changes in Staff Behavior in Infection Prevention Trials"
epimodels/coug_contagion
Simulation of an SEIR epidemic on student contact network
epimodels/epicookbook
Model code from epicookbook, a cookbook of epidemiological models
epimodels/Gillespie.jl
Stochastic Gillespie-type simulations using Julia
epimodels/inperson_sports
Code and data for 'Excess Risk of COVID-19 to University Populations Resulting from In-Person Sporting Events'
epimodels/MERScohort
Data and analysis code for the MERS risk factor study
epimodels/MetaFast
Python scripts for the automated generation of EpiFast configuration files.
epimodels/mixing_pattern
epimodels/ModelingInfectiousDisease
Repository for WSU VET_PATH 571-03, Spring 2018
epimodels/NetworkXTesting
epimodels/netzwerk
A test project wrapping modern C++ with Python using setuptools, CMake, pybind11, and GoogleTest
epimodels/Paper-3
Clean Paper 3
epimodels/Presentations
A repository of past posters and presentations by members of the Lab
epimodels/protective_decol
Code and data repository for 'Assessing the Potential of a Long-acting Skin Disinfectant in the Prevention of MRSA Transmission'
epimodels/prusaslicer-lulzbot-taz
Lulzbot TAZ printer and material profiles for use with PrusaSlicer.
epimodels/pullman_COVID
Two-population Model of SARS-CoV-2 within a University and Community Populations for Pullman, WA
epimodels/SERSymposia
A collection of symposium proposals for past Society for Epidemiological Research meetings.
epimodels/transientdynamics
Code for 'Transient Dynamics of Infection Transmission in a Simulated Intensive Care Unit`