Code repository "Confounding Contact: Bias Induced by Post Randomization Changes in Staff Behavior in Infection Prevention Trials"
The Python scripts in this repository require the 'os', 'numpy', 'stochpy' and 'random' libraries, all of which are available via pip. The R script requires the 'vioplot' library.
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'contact_mrsa.py': This script generates the primary results from the manuscript
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'contact_mrsasensitivity.py': One of two scripts for the sensitivity analysis reported in the manuscript. This script generates the main results of the model allowing all parameters to vary +/-10% of their original values.
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'contact_mrsasweep.py': The second of two scripts for the sensitivity analysis reported in the manuscript. This script varies the contact rate changes over a range from 0 to 50%.
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'analysis.R': The R script for generating the statistical results and plots found in the manuscript.