ericjcgalvez

ericjcgalvez's Stars

• bedapub/microbiome10XVisium

  Language:R2

• bedapub/space-microbe

  Language:Python4

• david-barnett/microViz

  R package for microbiome data visualization and statistics. Uses phyloseq, vegan and the tidyverse. Docker image available.

  Language:R10811

• stemangiola/tidybulk

  Brings bulk and pseudobulk transcriptomics to the tidyverse

  Language:R16625

• stemangiola/tidyseurat

  Seurat meets tidyverse. The best of both worlds.

  Language:R15812

• tidyverse/ggplot2

  An implementation of the Grammar of Graphics in R

  Language:R6.6k2k

• tseemann/prokka

  :zap: :aquarius: Rapid prokaryotic genome annotation

  Language:Perl858229

• tidyverse/dplyr

  dplyr: A grammar of data manipulation

  Language:R4.8k2.1k

• diriano/ploidyNGS

  Explore ploidy levels from NGS data alone

  Language:HTML3814

• thomasp85/ggraph

  Grammar of Graph Graphics

  Language:R1.1k114

• bbuchfink/diamond

  Accelerated BLAST compatible local sequence aligner.

  Language:C++1.1k180

• biocore/qiime

  Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

  Language:Python286265

• joey711/phyloseq

  phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

  Language:R593187

• NCBI-Hackathons/hackathon_v001_metagenomics

  Metagenomics Pipeline Repository for January, 2015 NCBI/ADDS Hackathon at NIH

  Language:Shell114

• HCBravoLab/metagenomeSeq

  Statistical analysis for sparse high-throughput sequencing

  Language:R6921