eriqande

NOAA, Southwest Fisheries Science CenterSanta Cruz, CA

Pinned Repositories

CKMRsim
efficient sampling for close-kin mark recapture power estimation
Language:R13 4 84
eca-bioinf-handbook
Lecture notes/book in progress on computing for conservation genomics
Language:TeX31 6 015
gsi_sim
Tool for doing and simulating genetic stock identification of salmon, etc.
Language:C6 9 30
microhaplotopia
R package for handling microhaplotypes
Language:R5 5 00
newhybrids
Bayesian analysis of hybrids
Language:C8 4 104
rep-res-course
Materials for a class on reproducible research with R, Rstudio, and GitHub
Language:Shell45 7 892
sisg-mcmc-opengl-computer-demos
C code for Eric Anderson's MCMC simulations/visualizations that he uses in the SISG course
Language:C6 4 01
sisg_mcmc_course
Lecture notes for Eric Anderson and Matthew Stephens SISG course on MCMC for Statistical Genetics
Language:HTML28 7 016
snppit
Program for large scale parent pair inference (in salmon, etc.)
Language:C6 7 72
whoa
Where's my Heterozygotes at? Observations on genotyping Accuracy
Language:HTML6 5 01

eriqande's Repositories

eriqande/eca-bioinf-handbook
Lecture notes/book in progress on computing for conservation genomics
Language:TeX31 6 015
eriqande/CKMRsim
efficient sampling for close-kin mark recapture power estimation
Language:R13 4 84
eriqande/snppit
Program for large scale parent pair inference (in salmon, etc.)
Language:C6 7 72
eriqande/CKMRpop
Language:R4 4 52
eriqande/mega-simple-microhap-snakeflow
Language:Python3 3 07
eriqande/con-gen-2024
Eric C. Anderson's teaching materials for ConGen-2024
Language:Python2 1 0
eriqande/con-gen-csu
Language:Shell2 2 023
eriqande/genoscapeRtools
tools for NGS data on migratory birds...mostly
Language:HTML2 3 11
eriqande/mega-non-model-wgs-snakeflow
Language:HTML2 3 1211
eriqande/rubias
identifying and reducing bias in hierarchical GSI
Language:HTML2 9 333
eriqande/mega-lcwgs-pw-fst-snakeflow
Language:Python1 2 017
eriqande/mega-post-bcf-exploratory-snakeflows
Language:HTML1 2 515
eriqande/nmfs-bioinf-2022
Language:Shell1 2 0
eriqande/Boing12
2 0
eriqande/ckmr-case-study-play
Language:TeX2 2
eriqande/con-gen-csu-bwavila
Computational Molecular Ecology Class
Language:TeX1 0
eriqande/con-gen-csu-eriqande
Language:TeX2 0
eriqande/fasterq-dump-snakemake-example
Language:Python3 02
eriqande/FCFSCmusicTools
Language:R2 0
eriqande/gscramble
pedigree-aware sampling with replacement from linked markers
Language:HTML4 552
eriqande/gscramble-paper
Language:TeX4 0
eriqande/gscramble-paper-sims-and-analyses
Language:R2 7
eriqande/mega-impute-and-phase-snakeflows
Language:Python1 01
eriqande/MixedUpParents
Language:HTML3 0
eriqande/MixedUpParents-sims-and-analyses
Language:R
eriqande/MixedUpSlimSims
Language:R2 0
eriqande/smk_ddrad
eriqande/snpArcher
Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.
Language:Python1 01
eriqande/spip
Simulation Pedigrees in Populations
Language:C2 1
eriqande/WGS-chinook
Language:Shell1 0