eriqande/gscramble

Issues

• Function to check formatting of reppops

  #39 opened 9 months ago by eriqande
  2

• Release gscramble 1.0.0

  #43 opened 9 months ago by eriqande
  2

• Take care of the leaky gutter

  #56 opened 9 months ago by eriqande
  0

• Demonstration of issue lists

  #53 opened 9 months ago by eriqande
  0

• Feed the cat.

  #55 opened 9 months ago by eriqande
  0

• Fix the names in the header files.

  #54 opened 9 months ago by eriqande
  0

• CRAN-required revisions during submission. From an email from Beni

  #45 opened 9 months ago by eriqande
  1

• If there are references describing the methods in your package, please

  #48 opened 9 months ago by eriqande
  1

• \dontrun{} should only be used if the example really cannot be executed

  #51 opened 9 months ago by eriqande
  1

• Please write TRUE and FALSE instead of T and F. Please don't use "T" or

  #49 opened 9 months ago by eriqande
  0

• Please add \value to .Rd files regarding exported methods and explain

  #50 opened 9 months ago by eriqande
  0

• You write information messages to the console that cannot be easily

  #52 opened 9 months ago by eriqande
  0

• It seems like you have too many spaces in your description field.

  #46 opened 9 months ago by eriqande
  0

• Please always write package names, software names and API (application

  #47 opened 9 months ago by eriqande
  0

• `devtools::check(remote = TRUE, manual = TRUE)`

  #44 opened 10 months ago by mgdesaix
  1

• T-001 `Geno` data object. Check and write/edit documentation for it.

  #24 opened 2 years ago by eriqande
  4

• T-001 `gsp4` data object. Check and write/edit documentation for it.

  #31 opened 2 years ago by eriqande
  1

• T-001 `GSP` data object. Check and write/edit documentation for it.

  #22 opened 2 years ago by eriqande
  1

• T-001 `gsp3` data object. Check and write/edit documentation for it.

  #30 opened 2 years ago by eriqande
  1

• T-001 `full_analysis()` NOT HIGH PRIORITY. THIS IS JUST FOR VISUALIZTION

  #6 opened 2 years ago by eriqande
  1

• T-001 `RepPop1` data object. Check and write/edit documentation for it.

  #28 opened 2 years ago by eriqande
  1

• T-001 `M_meta` data object. Check and write/edit documentation for it.

  #26 opened 2 years ago by eriqande
  0

• T-001 `I_meta` data object. Check and write/edit documentation for it.

  #25 opened 2 years ago by eriqande
  3

• T-001 `RepPop4` data object. Check and write/edit documentation for it.

  #29 opened 2 years ago by eriqande
  0

• T-001 `RecRates` data object. Check and write/edit documentation for it.

  #27 opened 2 years ago by eriqande
  1

• T-001 Show how to make a RecRates out of pairwise marker recombination fractions

  #41 opened 2 years ago by eriqande
  0

• S-001.3 Add code to do error checking and let the user know when they have made mistakes.

  #36 opened 2 years ago by eriqande
  1

• Change `rep` to `index` in the reppops

  #40 opened 2 years ago by eriqande
  1

• T-001 `GSP_opts` data object. Check and write/edit documentation for it.

  #23 opened 2 years ago by eriqande
  0

• T-001.3. Read indiv names from plink ped file to rownames of Geno

  #37 opened 2 years ago by eriqande
  0

• plot_simulated_chromosome_segments overwriting inds with the sample Rep x ID combinations

  #38 opened 2 years ago by tjsmyser
  1

• T-001.2 Organize the pkgdown reference into function groups.

  #34 opened 2 years ago by eriqande
  2

• S-001.2 Organize the documentation and make a pkgdown site

  #32 opened 2 years ago by eriqande
  0

• T-001.2 Write an introduction section to the package that breaks down the major function types

  #33 opened 2 years ago by eriqande
  1

• T-001 `segregate()`

  #18 opened 2 years ago by eriqande
  2

• T-001 `plot_simulated_chromosome_segments()`

  #12 opened 2 years ago by eriqande
  2

• T-001 `perm_gs_by_pops()`

  #11 opened 2 years ago by eriqande
  1

• T-001 `seg2tib()`

  #16 opened 2 years ago by eriqande
  1

• T-001 `recomb_point()`

  #15 opened 2 years ago by eriqande
  1

• T-001 `rearrange_genos()`

  #14 opened 2 years ago by eriqande
  1

• T-001 `seg_haps_through_gsp()`

  #17 opened 2 years ago by eriqande
  1

• T-001 `make_subscript_matrix()`

  #9 opened 2 years ago by eriqande
  1

• T-001 `tidy_up_sampled_haplos()`

  #20 opened 2 years ago by eriqande
  1

• T-001 `mat_scramble()`

  #10 opened 2 years ago by eriqande
  1

• T-001.2 Set up pkgdown system in package

  #35 opened 2 years ago by eriqande
  5

• T-001 `prep_gsp_for_hap_dropping()`

  #13 opened 2 years ago by eriqande
  0

• T-001 `gsp2dot()`

  #7 opened 2 years ago by eriqande
  2

• T-001 `import()`

  #8 opened 2 years ago by eriqande
  2

• T-001 `sim_level_founder_haplos()`

  #19 opened 2 years ago by eriqande
  2

• T-001 `xover()`

  #21 opened 2 years ago by eriqande
  1