Pinned Repositories
ChromGene
Gene-Based Modelling of Epigenomic Data
ChromTime
Modeling Spatio-temporal Dynamics of Chromatin Marks
CNEP
Constrained Non-Exonic Predictor (CNEP) provides a score of evidence that each base of the genome in a constrained non-exonic base from information within large-scale collections of epigenomic and transcription factor binding data.
ConsHMM
ConsHMM_CoV
csrep
differential and summary chromatin states
full_stack_ChromHMM_annotations
Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes
LECIF
Learning a genome-wide score of conservation at the functional genomics level between human and mouse
mouse_fullStack_annotations
mouse_fullStack_annotations
X-CNN
Computational method for fine-mapping chromatin interactions, e.g., Hi-C
ernstlab's Repositories
ernstlab/full_stack_ChromHMM_annotations
Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes
ernstlab/ConsHMM
ernstlab/LECIF
Learning a genome-wide score of conservation at the functional genomics level between human and mouse
ernstlab/ChromTime
Modeling Spatio-temporal Dynamics of Chromatin Marks
ernstlab/mouse_fullStack_annotations
mouse_fullStack_annotations
ernstlab/X-CNN
Computational method for fine-mapping chromatin interactions, e.g., Hi-C
ernstlab/ChromGene
Gene-Based Modelling of Epigenomic Data
ernstlab/csrep
differential and summary chromatin states
ernstlab/CNEP
Constrained Non-Exonic Predictor (CNEP) provides a score of evidence that each base of the genome in a constrained non-exonic base from information within large-scale collections of epigenomic and transcription factor binding data.
ernstlab/CMImpute
Cross-species and tissue imputation of species-level DNA methylation samples across mammalian species.
ernstlab/ConsHMM_CoV
ernstlab/ChromActivity
ChromActivity is a computational framework for the annotation of regulatory activity genomewide, through integration of data from epigenomic maps and multiple functional characterization assays.
ernstlab/LEPAE
ernstlab/chip_db
A lightweight database to deal with many ChIP-seq or similar whole-genome tracks. Allows for constant-time access of any position along the genome.
ernstlab/ENSAS
Identifying associations of de novo noncoding variants with autism through integration of gene expression, sequence and sex information
ernstlab/EpiVarIndividuals
ernstlab/ernstlab.github.io
ernstlab/inpsyght_states
ChromHMM and ConsHMM state-based analysis for InPSYght samples
ernstlab/SharprSeq