Score trakcs are provided in .hic format.
It is highly recommended to run the pipeline using high-performance computing (HPC) as follows:
snakemake -j 100 --cluster-config cluster.json --cluster \
"qsub -V -l h_rt={cluster.time},h_data={cluster.memory} -pe shared {cluster.threads} -N {cluster.name} -j y -o {cluster.output}" \
--latency-wait 60 --quiet --local-cores 1