estepi/ASpli

Issues

• Getting gene names from genome TxDb using T2T genome

  #27 opened a year ago by katiebegg
  0

• Alternative first exon undetected

  #25 opened 2 years ago by IsabelGam
  2

• jCounts function NA error

  #26 opened 2 years ago by rfarouni
  1

• Error in xj[i] : invalid subscript type 'list' when running jDUreport

  #24 opened 3 years ago by bertapozzi
  0

• Which alignment method and indexing options are suitable to use in ASPli?

  #23 opened 3 years ago by hkarakurt8742
  1

• Error in gbCounts and using the matrices in external tools

  #22 opened 3 years ago by hkarakurt
  2

• BAI Index file: Error in value[[3L]](cond) : 'Realloc' could not re-allocate memory (125829120 bytes)

  #21 opened 3 years ago by vandesm
  1

• All NAs using ASpli for all splicing events

  #20 opened 3 years ago by OnkarMulay
  2

• ASpli work for low read depth

  #19 opened 3 years ago by OnkarMulay
  3

• jCounts error

  #18 opened 4 years ago by vinothkr11
  2

• exportIntegratedSignals returns empty Gene View output

  #17 opened 4 years ago by Estherrr1997
  27

• error with jCounts

  #16 opened 4 years ago by Arkosen
  1

• Issues on BinGenome

  #14 opened 5 years ago by lucaskbobadilla
  12

• readCounts error

  #15 opened 4 years ago by ipatop
  2

• Runtime estimation

  #13 opened 5 years ago by OlgaVT
  7

• error '`[.data.frame`(aDataframe, , match(row.names(targets), colnames(aDataframe)))': undefined columns selected

  #5 opened 6 years ago by KateK
  26

• The analysis of a single bam file

  #12 opened 5 years ago by OlgaVT
  2

• intron definiton

  #11 opened 5 years ago by qicaibiology
  0

• AsDiscover Error Message

  #10 opened 5 years ago by diegogarcia101
  1

• algorithm on calculating intron retention

  #9 opened 5 years ago by qicaibiology
  0

• Splicing event assignation

  #4 opened 6 years ago by bellenger-l
  4

• Wrong gene coordinates after bingenome

  #8 opened 5 years ago by qicaibiology
  1

• What does the logFC mean in 3 groups of samples

  #7 opened 5 years ago by qicaibiology
  9

• crash problem

  #1 opened 7 years ago by rson920
  18

• ASpli Installation error

  #6 opened 6 years ago by nishagove
  1

• ERROR in avDbBin/gen.rdb

  #3 opened 6 years ago by fernandalpcosta
  0

• dots in chromosome names lead errors

  #2 opened 6 years ago by andreasleha
  4