Installing in ROS environment

Question

Installing in ROS environment

Opened this issue a year ago · 0 comments

Cheng-Nan-Lee commented a year ago

Hello,

I am using Ubuntu 18.04.
While following the installation instruction, I have encountered the following.

(ros_env) uav@uav-ThinkPad-T430s3:~/catkin_ws/src$ catkin build hand_eye_calibration hand_eye_calibration_target_extractor hand_eye_calibration_batch_estimation

Profile: default
Extending: [cached] /home/uav/miniconda3/envs/ros_env
Workspace: /home/uav/catkin_ws

Build Space: [exists] /home/uav/catkin_ws/build
Devel Space: [exists] /home/uav/catkin_ws/devel
Install Space: [unused] /home/uav/catkin_ws/install
Log Space: [exists] /home/uav/catkin_ws/logs
Source Space: [exists] /home/uav/catkin_ws/src
DESTDIR: [unused] None

Devel Space Layout: merged
Install Space Layout: None

Additional CMake Args: -DCMAKE_BUILD_TYPE=Release
Additional Make Args: None
Additional catkin Make Args: None
Internal Make Job Server: True
Cache Job Environments: False

Buildlisted Packages: None
Skiplisted Packages: None

Workspace configuration appears valid.

[build] Found 64 packages in 0.0 seconds.
[build] Package table is up to date.
Starting >>> catkin_simple
Starting >>> doxygen_catkin
Starting >>> libnabo
Starting >>> system_suitesparse
Finished <<< catkin_simple [ 0.1 seconds ]
Starting >>> asl_cmake_modules
Finished <<< doxygen_catkin [ 0.2 seconds ]
Starting >>> eigen_catkin
Finished <<< system_suitesparse [ 0.2 seconds ]
Finished <<< asl_cmake_modules [ 0.2 seconds ]
Starting >>> gflags_catkin
Starting >>> hand_eye_calibration
Finished <<< eigen_catkin [ 0.2 seconds ]
Starting >>> opencv3_catkin

Warnings << libnabo:make /home/uav/catkin_ws/logs/libnabo/build.make.004.log
warning: Tag SYMBOL_CACHE_SIZE' at line 289 of file /home/uav/catkin_ws/build/libnabo/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag SHOW_DIRECTORIES' at line 473 of file /home/uav/catkin_ws/build/libnabo/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag HTML_ALIGN_MEMBERS' at line 799 of file /home/uav/catkin_ws/build/libnabo/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag XML_SCHEMA' at line 1136 of file /home/uav/catkin_ws/build/libnabo/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag XML_DTD' at line 1142 of file /home/uav/catkin_ws/build/libnabo/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: doxygen no longer ships with the FreeSans font.
You may want to clear or change DOT_FONTNAME.
Otherwise you run the risk that the wrong font is being used for dot generated graphs.
warning: the dot tool could not be found at /home/uav/miniconda3/envs/ros_env/bin
/home/uav/catkin_ws/src/libnabo/nabo/nabo.h:199: warning: multiple use of section label 'ANN' while adding anchor, (first occurrence: /home/uav/catkin_ws/src/libnabo/nabo/nabo.h, line 170)
/home/uav/catkin_ws/src/libnabo/nabo/nabo.cpp:50: warning: Compound Nabo::runtime_error is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/third_party/any.hpp:36: warning: Compound linb::any is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/third_party/any.hpp:27: warning: Compound linb::bad_any_cast is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.h:217: warning: Member invalidIndex() (function) of namespace Nabo is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.h:223: warning: Member invalidValue() (function) of namespace Nabo is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.h:217: warning: Member invalidIndex() (function) of namespace Nabo is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.h:223: warning: Member invalidValue() (function) of namespace Nabo is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/third_party/any.hpp:29: warning: Member what() const noexcept override (function) of class linb::bad_any_cast is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.h:217: warning: Member invalidIndex() (function) of namespace Nabo is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.h:223: warning: Member invalidValue() (function) of namespace Nabo is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:74: warning: Member Vector (typedef) of class Nabo::BruteForceSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:75: warning: Member Matrix (typedef) of class Nabo::BruteForceSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:76: warning: Member Index (typedef) of class Nabo::BruteForceSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:77: warning: Member IndexVector (typedef) of class Nabo::BruteForceSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:78: warning: Member IndexMatrix (typedef) of class Nabo::BruteForceSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:88: warning: Member knn(const Matrix &query, IndexMatrix &indices, Matrix &dists2, const Index k, const T epsilon, const unsigned optionFlags, const T maxRadius) const (function) of class Nabo::BruteForceSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:89: warning: Member knn(const Matrix &query, IndexMatrix &indices, Matrix &dists2, const Vector &maxRadii, const Index k=1, const T epsilon=0, const unsigned optionFlags=0) const (function) of class Nabo::BruteForceSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:260: warning: Member Vector (typedef) of class Nabo::BruteForceSearchOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:261: warning: Member Matrix (typedef) of class Nabo::BruteForceSearchOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:262: warning: Member Index (typedef) of class Nabo::BruteForceSearchOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:224: warning: Member Vector (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:225: warning: Member Matrix (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:226: warning: Member Index (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:227: warning: Member IndexVector (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:228: warning: Member IndexMatrix (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:253: warning: Member knn(const Matrix &query, IndexMatrix &indices, Matrix &dists2, const Vector &maxRadii, const Index k=1, const T epsilon=0, const unsigned optionFlags=0) const (function) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:274: warning: Member Vector (typedef) of class Nabo::KDTreeBalancedPtInLeavesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:275: warning: Member Matrix (typedef) of class Nabo::KDTreeBalancedPtInLeavesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:276: warning: Member Index (typedef) of class Nabo::KDTreeBalancedPtInLeavesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:277: warning: Member IndexVector (typedef) of class Nabo::KDTreeBalancedPtInLeavesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:278: warning: Member IndexMatrix (typedef) of class Nabo::KDTreeBalancedPtInLeavesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:224: warning: Member Vector (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:225: warning: Member Matrix (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:226: warning: Member Index (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:227: warning: Member IndexVector (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:228: warning: Member IndexMatrix (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:253: warning: Member knn(const Matrix &query, IndexMatrix &indices, Matrix &dists2, const Vector &maxRadii, const Index k=1, const T epsilon=0, const unsigned optionFlags=0) const (function) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:350: warning: Member Vector (typedef) of class Nabo::KDTreeBalancedPtInNodesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:351: warning: Member Matrix (typedef) of class Nabo::KDTreeBalancedPtInNodesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:352: warning: Member Index (typedef) of class Nabo::KDTreeBalancedPtInNodesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:353: warning: Member IndexVector (typedef) of class Nabo::KDTreeBalancedPtInNodesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:354: warning: Member IndexMatrix (typedef) of class Nabo::KDTreeBalancedPtInNodesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:224: warning: Member Vector (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:225: warning: Member Matrix (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:226: warning: Member Index (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:227: warning: Member IndexVector (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:228: warning: Member IndexMatrix (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:253: warning: Member knn(const Matrix &query, IndexMatrix &indices, Matrix &dists2, const Vector &maxRadii, const Index k=1, const T epsilon=0, const unsigned optionFlags=0) const (function) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:96: warning: Member Vector (typedef) of class Nabo::KDTreeUnbalancedPtInLeavesImplicitBoundsStackOpt is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:97: warning: Member Matrix (typedef) of class Nabo::KDTreeUnbalancedPtInLeavesImplicitBoundsStackOpt is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:98: warning: Member Index (typedef) of class Nabo::KDTreeUnbalancedPtInLeavesImplicitBoundsStackOpt is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:99: warning: Member IndexVector (typedef) of class Nabo::KDTreeUnbalancedPtInLeavesImplicitBoundsStackOpt is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:100: warning: Member IndexMatrix (typedef) of class Nabo::KDTreeUnbalancedPtInLeavesImplicitBoundsStackOpt is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:224: warning: Member Vector (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:225: warning: Member Matrix (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:226: warning: Member Index (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:227: warning: Member IndexVector (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:228: warning: Member IndexMatrix (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:253: warning: Member knn(const Matrix &query, IndexMatrix &indices, Matrix &dists2, const Vector &maxRadii, const Index k=1, const T epsilon=0, const unsigned optionFlags=0) const (function) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.cpp:53: warning: Member operator<<(const T &t) (function) of class Nabo::runtime_error is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.cpp:64: warning: Member runtime_error(const runtime_error &re) (function) of class Nabo::runtime_error is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.cpp:51: warning: Member ss (variable) of class Nabo::runtime_error is not documented.
cd /home/uav/catkin_ws/build/libnabo; catkin build --get-env libnabo | catkin env -si /home/uav/miniconda3/envs/ros_env/bin/make --jobserver-auth=4,5; cd -

.................................................................................................................................................................................................................................
Finished <<< gflags_catkin [ 0.2 seconds ]
Starting >>> glog_catkin
Finished <<< hand_eye_calibration [ 0.2 seconds ]
Starting >>> opengv

Warnings << libnabo:install /home/uav/catkin_ws/logs/libnabo/build.install.004.log
warning: Tag SYMBOL_CACHE_SIZE' at line 289 of file /home/uav/catkin_ws/build/libnabo/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag SHOW_DIRECTORIES' at line 473 of file /home/uav/catkin_ws/build/libnabo/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag HTML_ALIGN_MEMBERS' at line 799 of file /home/uav/catkin_ws/build/libnabo/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag XML_SCHEMA' at line 1136 of file /home/uav/catkin_ws/build/libnabo/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: Tag XML_DTD' at line 1142 of file /home/uav/catkin_ws/build/libnabo/Doxyfile' has become obsolete.
To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u"
warning: doxygen no longer ships with the FreeSans font.
You may want to clear or change DOT_FONTNAME.
Otherwise you run the risk that the wrong font is being used for dot generated graphs.
warning: the dot tool could not be found at /home/uav/miniconda3/envs/ros_env/bin
/home/uav/catkin_ws/src/libnabo/nabo/nabo.h:199: warning: multiple use of section label 'ANN' while adding anchor, (first occurrence: /home/uav/catkin_ws/src/libnabo/nabo/nabo.h, line 170)
/home/uav/catkin_ws/src/libnabo/nabo/nabo.cpp:50: warning: Compound Nabo::runtime_error is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/third_party/any.hpp:36: warning: Compound linb::any is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/third_party/any.hpp:27: warning: Compound linb::bad_any_cast is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.h:217: warning: Member invalidIndex() (function) of namespace Nabo is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.h:223: warning: Member invalidValue() (function) of namespace Nabo is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.h:217: warning: Member invalidIndex() (function) of namespace Nabo is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.h:223: warning: Member invalidValue() (function) of namespace Nabo is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/third_party/any.hpp:29: warning: Member what() const noexcept override (function) of class linb::bad_any_cast is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.h:217: warning: Member invalidIndex() (function) of namespace Nabo is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.h:223: warning: Member invalidValue() (function) of namespace Nabo is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:74: warning: Member Vector (typedef) of class Nabo::BruteForceSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:75: warning: Member Matrix (typedef) of class Nabo::BruteForceSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:76: warning: Member Index (typedef) of class Nabo::BruteForceSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:77: warning: Member IndexVector (typedef) of class Nabo::BruteForceSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:78: warning: Member IndexMatrix (typedef) of class Nabo::BruteForceSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:88: warning: Member knn(const Matrix &query, IndexMatrix &indices, Matrix &dists2, const Index k, const T epsilon, const unsigned optionFlags, const T maxRadius) const (function) of class Nabo::BruteForceSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:89: warning: Member knn(const Matrix &query, IndexMatrix &indices, Matrix &dists2, const Vector &maxRadii, const Index k=1, const T epsilon=0, const unsigned optionFlags=0) const (function) of class Nabo::BruteForceSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:260: warning: Member Vector (typedef) of class Nabo::BruteForceSearchOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:261: warning: Member Matrix (typedef) of class Nabo::BruteForceSearchOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:262: warning: Member Index (typedef) of class Nabo::BruteForceSearchOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:224: warning: Member Vector (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:225: warning: Member Matrix (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:226: warning: Member Index (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:227: warning: Member IndexVector (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:228: warning: Member IndexMatrix (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:253: warning: Member knn(const Matrix &query, IndexMatrix &indices, Matrix &dists2, const Vector &maxRadii, const Index k=1, const T epsilon=0, const unsigned optionFlags=0) const (function) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:274: warning: Member Vector (typedef) of class Nabo::KDTreeBalancedPtInLeavesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:275: warning: Member Matrix (typedef) of class Nabo::KDTreeBalancedPtInLeavesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:276: warning: Member Index (typedef) of class Nabo::KDTreeBalancedPtInLeavesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:277: warning: Member IndexVector (typedef) of class Nabo::KDTreeBalancedPtInLeavesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:278: warning: Member IndexMatrix (typedef) of class Nabo::KDTreeBalancedPtInLeavesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:224: warning: Member Vector (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:225: warning: Member Matrix (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:226: warning: Member Index (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:227: warning: Member IndexVector (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:228: warning: Member IndexMatrix (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:253: warning: Member knn(const Matrix &query, IndexMatrix &indices, Matrix &dists2, const Vector &maxRadii, const Index k=1, const T epsilon=0, const unsigned optionFlags=0) const (function) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:350: warning: Member Vector (typedef) of class Nabo::KDTreeBalancedPtInNodesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:351: warning: Member Matrix (typedef) of class Nabo::KDTreeBalancedPtInNodesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:352: warning: Member Index (typedef) of class Nabo::KDTreeBalancedPtInNodesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:353: warning: Member IndexVector (typedef) of class Nabo::KDTreeBalancedPtInNodesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:354: warning: Member IndexMatrix (typedef) of class Nabo::KDTreeBalancedPtInNodesStackOpenCL is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:224: warning: Member Vector (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:225: warning: Member Matrix (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:226: warning: Member Index (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:227: warning: Member IndexVector (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:228: warning: Member IndexMatrix (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:253: warning: Member knn(const Matrix &query, IndexMatrix &indices, Matrix &dists2, const Vector &maxRadii, const Index k=1, const T epsilon=0, const unsigned optionFlags=0) const (function) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:96: warning: Member Vector (typedef) of class Nabo::KDTreeUnbalancedPtInLeavesImplicitBoundsStackOpt is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:97: warning: Member Matrix (typedef) of class Nabo::KDTreeUnbalancedPtInLeavesImplicitBoundsStackOpt is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:98: warning: Member Index (typedef) of class Nabo::KDTreeUnbalancedPtInLeavesImplicitBoundsStackOpt is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:99: warning: Member IndexVector (typedef) of class Nabo::KDTreeUnbalancedPtInLeavesImplicitBoundsStackOpt is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:100: warning: Member IndexMatrix (typedef) of class Nabo::KDTreeUnbalancedPtInLeavesImplicitBoundsStackOpt is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:224: warning: Member Vector (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:225: warning: Member Matrix (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:226: warning: Member Index (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:227: warning: Member IndexVector (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:228: warning: Member IndexMatrix (typedef) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo_private.h:253: warning: Member knn(const Matrix &query, IndexMatrix &indices, Matrix &dists2, const Vector &maxRadii, const Index k=1, const T epsilon=0, const unsigned optionFlags=0) const (function) of class Nabo::OpenCLSearch is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.cpp:53: warning: Member operator<<(const T &t) (function) of class Nabo::runtime_error is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.cpp:64: warning: Member runtime_error(const runtime_error &re) (function) of class Nabo::runtime_error is not documented.
/home/uav/catkin_ws/src/libnabo/nabo/nabo.cpp:51: warning: Member ss (variable) of class Nabo::runtime_error is not documented.
cd /home/uav/catkin_ws/build/libnabo; catkin build --get-env libnabo | catkin env -si /home/uav/miniconda3/envs/ros_env/bin/make install; cd -

.................................................................................................................................................................................................................................
Finished <<< libnabo [ 1.2 seconds ]
Starting >>> protobuf_catkin

Errors << glog_catkin:make /home/uav/catkin_ws/logs/glog_catkin/build.make.005.log
make[3]: warning: -j8 forced in submake: resetting jobserver mode.
libtool: Version mismatch error. This is libtool 2.4.7, but the
libtool: definition of this LT_INIT comes from libtool 2.4.2.
libtool: You should recreate aclocal.m4 with macros from libtool 2.4.7
libtool: and run autoconf again.
make[3]: *** [Makefile:1187: src/libglog_la-raw_logging.lo] Error 63
make[3]: *** Waiting for unfinished jobs....
libtool: Version mismatch error. This is libtool 2.4.7, but the
libtool: definition of this LT_INIT comes from libtool 2.4.2.
libtool: You should recreate aclocal.m4 with macros from libtool 2.4.7
libtool: and run autoconf again.
make[3]: *** [Makefile:1180: src/libglog_la-logging.lo] Error 63
libtool: Version mismatch error. This is libtool 2.4.7, but the
libtool: definition of this LT_INIT comes from libtool 2.4.2.
libtool: You should recreate aclocal.m4 with macros from libtool 2.4.7
libtool: and run autoconf again.
make[3]: *** [Makefile:1194: src/libglog_la-vlog_is_on.lo] Error 63
libtool: Version mismatch error. This is libtool 2.4.7, but the
libtool: definition of this LT_INIT comes from libtool 2.4.2.
libtool: You should recreate aclocal.m4 with macros from libtool 2.4.7
libtool: and run autoconf again.
make[3]: *** [Makefile:1208: src/libglog_la-demangle.lo] Error 63
libtool: Version mismatch error. This is libtool 2.4.7, but the
libtool: definition of this LT_INIT comes from libtool 2.4.2.
libtool: You should recreate aclocal.m4 with macros from libtool 2.4.7
libtool: and run autoconf again.
make[3]: *** [Makefile:1222: src/libglog_la-signalhandler.lo] Error 63
libtool: Version mismatch error. This is libtool 2.4.7, but the
libtool: definition of this LT_INIT comes from libtool 2.4.2.
libtool: You should recreate aclocal.m4 with macros from libtool 2.4.7
libtool: and run autoconf again.
make[3]: *** [Makefile:1215: src/libglog_la-symbolize.lo] Error 63
libtool: Version mismatch error. This is libtool 2.4.7, but the
libtool: definition of this LT_INIT comes from libtool 2.4.2.
libtool: You should recreate aclocal.m4 with macros from libtool 2.4.7
libtool: and run autoconf again.
make[3]: *** [Makefile:1201: src/libglog_la-utilities.lo] Error 63
In file included from src/symbolize_unittest.cc:41:0:
src/googletest.h:579:33: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void* operator new(size_t size) throw(std::bad_alloc) {
^~~~~
src/googletest.h:586:35: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated]
void* operator new[](size_t size) throw(std::bad_alloc) {
^~~~~
make[2]: *** [CMakeFiles/glog_src.dir/build.make:86: glog_src-prefix/src/glog_src-stamp/glog_src-build] Error 2
make[1]: *** [CMakeFiles/Makefile2:272: CMakeFiles/glog_src.dir/all] Error 2
make: *** [Makefile:146: all] Error 2
cd /home/uav/catkin_ws/build/glog_catkin; catkin build --get-env glog_catkin | catkin env -si /home/uav/miniconda3/envs/ros_env/bin/make --jobserver-auth=4,5; cd -

..................................... Failed << glog_catkin:make Failed <<< glog_catkin Abandoned <<< sm_common Abandoned <<< sm_deprecation Abandoned <<< sm_logging Abandoned <<< sm_random Abandoned <<< yaml_cpp_catkin Abandoned <<< eigen_checks Abandoned <<< minkindr Abandoned <<< ethzasl_apriltag2 Abandoned <<< sm_boost Abandoned <<< sm_matrix_archive Abandoned <<< sm_property_tree Abandoned <<< sm_eigen Abandoned <<< sm_kinematics Abandoned <<< sm_timing Abandoned <<< sm_value_store Abandoned <<< sparse_block_matrix Abandoned <<< aslam_backend Abandoned <<< aslam_backend_expressions Abandoned <<< bsplines Abandoned <<< aslam_splines Abandoned <<< oomact Abandoned <<< hand_eye_calib Abandoned <<< aslam_cv_common Abandoned <<< aslam_cv_cameras Abandoned <<< aslam_cv_frames Abandoned <<< aslam_cv_matcher Abandoned <<< aslam_cv_geometric_vision Abandoned <<< aslam_cv_calibration Abandoned <<< hand_eye_calib ............................................................................................................................................................................................
[ Exited with code 2 ]
[ 1.3 seconds ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
ration_batch_estimation [ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
[ Unrelated job failed ]
ration_target_extractor [ Unrelated job failed ]

Errors << opengv:check /home/uav/catkin_ws/logs/opengv/build.check.004.log
Found catkin. Creating opengv package with catkin
CMake Error at modules/FindEigen.cmake:33 (file):
file failed to open for reading (No such file or directory):

/home/uav/miniconda3/envs/ros_env/include/eigen3/Eigen/src/Core/util/Macros.h

Call Stack (most recent call first):
modules/FindEigen.cmake:59 (_eigen3_check_version)
CMakeLists.txt:162 (find_package)

CMake Warning at CMakeLists.txt:165 (message):
Eigen: /home/uav/miniconda3/envs/ros_env/include/eigen3

make: *** [Makefile:3242: cmake_check_build_system] Error 1
cd /home/uav/catkin_ws/build/opengv; catkin build --get-env opengv | catkin env -si /home/uav/miniconda3/envs/ros_env/bin/make cmake_check_build_system; cd -

.................................................................................................................................................................................................................................
Failed << opengv:check [ Exited with code 2 ]
Failed <<< opengv [ 1.5 seconds ]
^C[build] Interrupted by user!
[build] Summary: 8 of 41 packages succeeded.
[build] Ignored: 23 packages were skipped or are skiplisted.
[build] Warnings: 1 packages succeeded with warnings.
[build] Abandoned: 31 packages were abandoned.
[build] Failed: 2 packages failed.
[build] Runtime: 4.7 seconds total.

I have reinstalled libtool to no avail. How might I resolve thiis?

(ros_env) uav@uav-ThinkPad-T430s3:~/catkin_ws/src$ catkin build hand_eye_calibration hand_eye_calibration_target_extractor hand_eye_calibration_batch_estimation

Profile: default Extending: [cached] /home/uav/miniconda3/envs/ros_env Workspace: /home/uav/catkin_ws

Build Space: [exists] /home/uav/catkin_ws/build Devel Space: [exists] /home/uav/catkin_ws/devel Install Space: [unused] /home/uav/catkin_ws/install Log Space: [exists] /home/uav/catkin_ws/logs Source Space: [exists] /home/uav/catkin_ws/src DESTDIR: [unused] None

Devel Space Layout: merged Install Space Layout: None

Additional CMake Args: -DCMAKE_BUILD_TYPE=Release Additional Make Args: None Additional catkin Make Args: None Internal Make Job Server: True Cache Job Environments: False