aslam_cv_common compilation fails.
eugval opened this issue · 9 comments
eugval commented
Hello,
Thank you very much for that package, looks like a great way to do the calibration!
I am having some issues with compiling aslam_cv_common :
Running catkin build hand_eye_calibration hand_eye_calibration_target_extractor hand_eye_calibration_batch_estimation
gives:
___________________________________________________________________________________________________________________________________________________________________________________________________________
Errors << aslam_backend_expressions:make /home/Projects/extrinsics_calibration/logs/aslam_backend_expressions/build.make.001.log
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_solve'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_l_transpose'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_analyze'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_l_scale'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_l_start'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_l_free_dense'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_l_allocate_dense'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_free_dense'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_l_free_sparse'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_finish'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_start'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `int SuiteSparseQR_numeric<double>(double, cholmod_sparse_struct*, SuiteSparseQR_factorization<double>*, cholmod_common_struct*)'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_factorize'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `SuiteSparseQR_factorization<double>* SuiteSparseQR_symbolic<double>(int, int, cholmod_sparse_struct*, cholmod_common_struct*)'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_free_factor'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `int SuiteSparseQR_free<double>(SuiteSparseQR_factorization<double>**, cholmod_common_struct*)'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_l_finish'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_dense_struct* SuiteSparseQR_solve<double>(int, SuiteSparseQR_factorization<double>*, cholmod_dense_struct*, cholmod_common_struct*)'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_change_factor'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_amd'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_analyze_p'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `long SuiteSparseQR<double>(int, double, long, int, cholmod_sparse_struct*, cholmod_sparse_struct*, cholmod_dense_struct*, cholmod_sparse_struct**, cholmod_dense_struct**, cholmod_sparse_struct**, long**, cholmod_sparse_struct**, long**, cholmod_dense_struct**, cholmod_common_struct*)'
/home/Projects/extrinsics_calibration/devel/lib/libaslam_backend.so: undefined reference to `cholmod_dense_struct* SuiteSparseQR_qmult<double>(int, SuiteSparseQR_factorization<double>*, cholmod_dense_struct*, cholmod_common_struct*)'
collect2: error: ld returned 1 exit status
make[2]: *** [/home/Projects/extrinsics_calibration/devel/lib/aslam_backend_expressions/aslam_backend_expressions-profiling] Error 1
make[1]: *** [CMakeFiles/aslam_backend_expressions-profiling.dir/all] Error 2
make: *** [all] Error 2
cd /home/Projects/extrinsics_calibration/build/aslam_backend_expressions; catkin build --get-env aslam_backend_expressions | catkin env -si /usr/bin/make --jobserver-fds=6,7 -j; cd -
...........................................................................................................................................................................................................
Failed << aslam_backend_expressions:make [ Exited with code 2 ]
Failed <<< aslam_backend_expressions [ 0.4 seconds ]
Abandoned <<< aslam_splines [ Unrelated job failed ]
Abandoned <<< oomact [ Unrelated job failed ]
Abandoned <<< hand_eye_calibration_batch_estimation [ Unrelated job failed ]
Abandoned <<< aslam_cv_cameras [ Unrelated job failed ]
Abandoned <<< aslam_cv_frames [ Unrelated job failed ]
Abandoned <<< aslam_cv_matcher [ Unrelated job failed ]
Abandoned <<< aslam_cv_geometric_vision [ Unrelated job failed ]
Abandoned <<< aslam_cv_calibration [ Unrelated job failed ]
Abandoned <<< hand_eye_calibration_target_extractor [ Unrelated job failed ]
___________________________________________________________________________________________________________________________________________________________________________________________________________
Errors << aslam_cv_common:cmake /home/Projects/extrinsics_calibration/logs/aslam_cv_common/build.cmake.014.log
CMake Error at /home/Projects/extrinsics_calibration/devel/share/catkin_simple/cmake/catkin_simple-extras.cmake:38 (find_package):
By not providing "Findprotobuf_catkin.cmake" in CMAKE_MODULE_PATH this
project has asked CMake to find a package configuration file provided by
"protobuf_catkin", but CMake did not find one.
Could not find a package configuration file provided by "protobuf_catkin"
with any of the following names:
protobuf_catkinConfig.cmake
protobuf_catkin-config.cmake
Add the installation prefix of "protobuf_catkin" to CMAKE_PREFIX_PATH or
set "protobuf_catkin_DIR" to a directory containing one of the above files.
If "protobuf_catkin" provides a separate development package or SDK, be
sure it has been installed.
Call Stack (most recent call first):
CMakeLists.txt:5 (catkin_simple)
cd /home/Projects/extrinsics_calibration/build/aslam_cv_common; catkin build --get-env aslam_cv_common | catkin env -si /usr/bin/cmake /home/Projects/extrinsics_calibration/src/aslam_cv2/aslam_cv_common --no-warn-unused-cli -DCATKIN_DEVEL_PREFIX=/home/Projects/extrinsics_calibration/devel -DCMAKE_INSTALL_PREFIX=/home/Projects/extrinsics_calibration/install -DCMAKE_BUILD_TYPE=Release; cd -
...........................................................................................................................................................................................................
Failed << aslam_cv_common:cmake [ Exited with code 1 ]
Failed <<< aslam_cv_common [ 0.6 seconds ]
[build] Summary: 29 of 40 packages succeeded.
[build] Ignored: 24 packages were skipped or are blacklisted.
[build] Warnings: None.
[build] Abandoned: 9 packages were abandoned.
[build] Failed: 2 packages failed.
[build] Runtime: 3.5 seconds total. ```
Any Idea how to fix this or what could be causing this compilation error?
Thanks!
eugval commented
Update:
After adding the following two lines :
FIND_PACKAGE(SuiteSparse)
include_directories(${SUITESPARSE_INCLUDE_DIRS})
To /src/suitesparse/system_suitesparse/CMakeLists.txt
The error is reduced to :
Starting >>> oomact
____________________________________________________________________________________________________________________________________________________________________________________________
Errors << aslam_cv_common:cmake /home/eugene/Projects/extrinsics_calibration/logs/aslam_cv_common/build.cmake.016.log
CMake Error at /home/eugene/Projects/extrinsics_calibration/devel/share/catkin_simple/cmake/catkin_simple-extras.cmake:38 (find_package):
By not providing "Findprotobuf_catkin.cmake" in CMAKE_MODULE_PATH this
project has asked CMake to find a package configuration file provided by
"protobuf_catkin", but CMake did not find one.
Could not find a package configuration file provided by "protobuf_catkin"
with any of the following names:
protobuf_catkinConfig.cmake
protobuf_catkin-config.cmake
Add the installation prefix of "protobuf_catkin" to CMAKE_PREFIX_PATH or
set "protobuf_catkin_DIR" to a directory containing one of the above files.
If "protobuf_catkin" provides a separate development package or SDK, be
sure it has been installed.
Call Stack (most recent call first):
CMakeLists.txt:5 (catkin_simple)
cd /home/eugene/Projects/extrinsics_calibration/build/aslam_cv_common; catkin build --get-env aslam_cv_common | catkin env -si /usr/bin/cmake /home/eugene/Projects/extrinsics_calibration/src/aslam_cv2/aslam_cv_common --no-warn-unused-cli -DCATKIN_DEVEL_PREFIX=/home/eugene/Projects/extrinsics_calibration/devel -DCMAKE_INSTALL_PREFIX=/home/eugene/Projects/extrinsics_calibration/install -DCMAKE_BUILD_TYPE=Release; cd -
............................................................................................................................................................................................
Failed << aslam_cv_common:cmake [ Exited with code 1 ]
Failed <<< aslam_cv_common [ 0.6 seconds ]
Abandoned <<< hand_eye_calibration_batch_estimation [ Unrelated job failed ]
Abandoned <<< aslam_cv_cameras [ Unrelated job failed ]
Abandoned <<< aslam_cv_frames [ Unrelated job failed ]
Abandoned <<< aslam_cv_matcher [ Unrelated job failed ]
Abandoned <<< aslam_cv_geometric_vision [ Unrelated job failed ]
Abandoned <<< aslam_cv_calibration [ Unrelated job failed ]
Abandoned <<< hand_eye_calibration_target_extractor [ Unrelated job failed ]
Finished <<< oomact [ 0.3 seconds ]
[build] Summary: 32 of 40 packages succeeded.
[build] Ignored: 24 packages were skipped or are blacklisted.
[build] Warnings: None.
[build] Abandoned: 7 packages were abandoned.
[build] Failed: 1 packages failed.
[build] Runtime: 3.7 seconds total.
OnyxBlack7 commented
I've met the same error. Have you solved it?
eugval commented
I haven't I'm afraid.
ardian-selmonaj commented
I had the same problem and solved it by cloning this package into src folder of catkin_ws.
Then I first build this protobuf_catkin package and then extended the CMakeLists of aslam_cv_common with:
find_package(catkin_simple REQUIRED)
find_package(protobuf_catkin REQUIRED)
catkin_simple(ALL_DEPS_REQUIRED)
and then build the three hand-eye packages with catkin.
zhuxiaomengjj commented
I had the same problem and solved it by cloning this package into
srcfolder ofcatkin_ws.
Then I first build this protobuf_catkin package and then extended the CMakeLists of aslam_cv_common with:
find_package(catkin_simple REQUIRED)
find_package(protobuf_catkin REQUIRED)
catkin_simple(ALL_DEPS_REQUIRED)and then build the three hand-eye packages with catkin.
Yes, it's helped, thanks
flyover-26 commented
I had the same problem and solved it by cloning this package into
srcfolder ofcatkin_ws. Then I first build this protobuf_catkin package and then extended the CMakeLists of aslam_cv_common with:
find_package(catkin_simple REQUIRED)find_package(protobuf_catkin REQUIRED)catkin_simple(ALL_DEPS_REQUIRED)and then build the three hand-eye packages with catkin.
hi!I got the same problem in project https://github.com/ethz-asl/mav_voxblox_planning#papers-and-references
Could you tell me how to build the protobuf_catkin package?
Thank you a lot!Looking forward to your reply!
flyover-26 commented
@ardian-selmonaj waiting for your help for problem above~
ardian-selmonaj commented
@flyover-26 as far as I remember, just the normal way: clone the protobuf_catkin package and run catkin build protobuf_catkin.
Hao-Starrr commented
cd ~/catkin_ws/src
git clone https://github.com/ethz-asl/protobuf_catkin.git
catkin build protobuf_catkin
Just clone and build. Then you can catkin_make again.