shuffle-guidance
Quick start
Either have docker installed or ensure you have all the required dependencies as specified in the Docker container.
Install the Nextflow runtime by running the following command:
$ curl -fsSL get.nextflow.io | bash
When done, you can launch the pipeline execution by entering the command shown below:
$ nextflow run skptic/shuffle-guidance
By default the pipeline is executed against the provided example dataset.
Example usage:
nextflow run shuffle-guidance.nf --run_mode='guidance' --output=results --seq=./tutorial/tips16_0.5_001.0400.fa --shuffles=100
--run_mode
Either HoT, guidance or guidance2
--shuffles
Number of shuffle replicates to generate