evanfloden
CEO and Co-founder of Seqera Labs. I'm into genomics, workflows (@nextflow-io) and @home-assistant
Seqera Labs and @nextflow-io Barcelona, Spain
Pinned Repositories
concTree
Using Alignment Uncertainty from Many Multiple Sequence Alignments to Create Consensus Trees
dpa-analysis
Nextflow Pipeline for the analysis of Double Progressive Alignment (DPA)
lncRNA-Annotation-nf
A Nextflow lncRNA Annotation Pipeline based on STAR, Cufflinks and FEELnc
nf-module-demo
Demo for Nextflow modules and components proposal
nf-toxomix
OpenRiskNet pipeline for TGX case study: toxicology predictions based on transcriptomic profiles
paraMSA
Using uncertainty in multiple sequence alignments for phylogenetic trees and bootstrap support values
phyvaluate-nf
Evaluation of Phylogenetic Trees from Simulated Data
stable-diffusion-nf
Proof-of-concept pipeline for stable diffusion in Nextflow and Tower
tuxedo-nf
A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown
vast-tools-nf
A Nextflow Implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data
evanfloden's Repositories
evanfloden/tuxedo-nf
A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown
evanfloden/dpa-analysis
Nextflow Pipeline for the analysis of Double Progressive Alignment (DPA)
evanfloden/vast-tools-nf
A Nextflow Implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data
evanfloden/nf-toxomix
OpenRiskNet pipeline for TGX case study: toxicology predictions based on transcriptomic profiles
evanfloden/stable-diffusion-nf
Proof-of-concept pipeline for stable diffusion in Nextflow and Tower
evanfloden/aether
Intelligent and cost-effective bidding on cloud computing instances for bioinformatics pipelines.
evanfloden/ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
evanfloden/artful-jupyter-container
Jupyter on Ubuntu Artful Aardvark in a Singularity container.
evanfloden/ATACFlow
An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter
evanfloden/awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
evanfloden/bioconda-recipes
Conda recipes for the bioconda channel.
evanfloden/eager
A fully reproducible and state of the art ancient DNA analysis pipeline
evanfloden/embeded-analysis-nf
Analysis to determine the effect of the inclusion of more sequences in large MSA
evanfloden/flowcraft
A Nextflow pipeline assembler for genomics :whale::package:
evanfloden/home-assistant-config
Home Assistant Config (home-assistant.io)
evanfloden/jupyter-notebook-images
Repository for customized jupyter notebook images for OpenRiskNet
evanfloden/multi-package-containers
Testing building mulled containers for multi-requirement tools.
evanfloden/nextflow
A DSL for data-driven computational pipelines
evanfloden/nf-co.re
Code and files for the main nf-core website >>>
evanfloden/nf-openshift-jupyterhub
Configuration for launching Nextflow in Openshift/k8s with JupyterHub
evanfloden/nf-summerschool
Nextflow training material for Summer School in Bioinformatics 2019 at EMBL-EBI
evanfloden/nf-workflows
Repository of Nextflow+BioContainers workflows
evanfloden/quickstart-nextflow
AWS Quick Start Team
evanfloden/rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
evanfloden/sc2-msspe-bioinfo
bioinformatics for sars-cov-2 msspe protocol
evanfloden/sequence-number-analysis
evanfloden/stimulus
Stochastic Testing and Input Manipulation for Unbiased Learning Systems
evanfloden/transXpress-nf
A Nextflow pipeline for transXpress
evanfloden/website
Nextflow public web site
evanfloden/website-1
CODE CHECK project website and material (badges, logos, ...)