evanfloden
CEO and Co-founder of Seqera Labs. I'm into genomics, workflows (@nextflow-io) and @home-assistant
Seqera Labs and @nextflow-io Barcelona, Spain
Pinned Repositories
concTree
Using Alignment Uncertainty from Many Multiple Sequence Alignments to Create Consensus Trees
dpa-analysis
Nextflow Pipeline for the analysis of Double Progressive Alignment (DPA)
lncRNA-Annotation-nf
A Nextflow lncRNA Annotation Pipeline based on STAR, Cufflinks and FEELnc
nf-module-demo
Demo for Nextflow modules and components proposal
nf-toxomix
OpenRiskNet pipeline for TGX case study: toxicology predictions based on transcriptomic profiles
paraMSA
Using uncertainty in multiple sequence alignments for phylogenetic trees and bootstrap support values
phyvaluate-nf
Evaluation of Phylogenetic Trees from Simulated Data
stable-diffusion-nf
Proof-of-concept pipeline for stable diffusion in Nextflow and Tower
tuxedo-nf
A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown
vast-tools-nf
A Nextflow Implementation of VAST-TOOLS for profiling alternative splicing events in RNA-Seq data
evanfloden's Repositories
evanfloden/lncRNA-Annotation-nf
A Nextflow lncRNA Annotation Pipeline based on STAR, Cufflinks and FEELnc
evanfloden/nf-module-demo
Demo for Nextflow modules and components proposal
evanfloden/paraMSA
Using uncertainty in multiple sequence alignments for phylogenetic trees and bootstrap support values
evanfloden/phyvaluate-nf
Evaluation of Phylogenetic Trees from Simulated Data
evanfloden/sra-dump-nf
Some ideas for pulling experiments directly from the SRA with Nextflow
evanfloden/bioinformatics
evanfloden/companion
Pipeline for automatic eukaryotic parasite annotation
evanfloden/companion-mac-docker
evanfloden/companion-mac-native
Fork of Companion Pipeline for native, non-Docker MacOSX execution
evanfloden/faq
Nextflow frequently asked questions
evanfloden/home-assistant.github.io
:blue_book: Jekyll project to generate home-assistant.io
evanfloden/kallisto-nf-reproduce
Experiment illustrating how Nextflow can make biological pipelines reproducible
evanfloden/mac-pixel-clock-patch-V2
evanfloden/phylo-tutorial-nf
An Introductory Nextflow Tutorial
evanfloden/piper-nf
RNA mapping pipeline
evanfloden/raxml-nf
RAxML pipeline
evanfloden/RMfam
An RNA motifs database
evanfloden/sepp
Ensemble of HMM methods (SEPP, TIPP, UPP)
evanfloden/seqan
SeqAn's official repository.
evanfloden/shootstrap2
shootstrap + new alternative MSA methods
evanfloden/shuffle-guidance
Nextflow pipeline for creating shuffle and shuffle + Hot/Guidance/Guidance2 alignments
evanfloden/skptic.github.io
evanfloden/spanish_babel
A Spanish language generator
evanfloden/tcoffee
A collection of tools for Multiple Alignments of DNA, RNA, Protein Sequence
evanfloden/vast-tools
A toolset for profiling alternative splicing events in RNA-Seq data.