Pinned Repositories
bdei
Birth-Death Exposed-Infectious (BDEI) model parameter inference from phylogenetic trees
booster
condor
ConDor: a workflow to detect convergent evolution in large protein alignments
dockerfiles
Dockerfiles for tools commonly used for phylogenetic analyses
goalign
Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.
gotree
Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.
pastml
Ancestral character reconstruction and visualisation for rooted phylogenetic trees
phylocovid
phylodeep
PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.
treesimulator
evolbioinfo's Repositories
evolbioinfo/gotree
Gotree is a set of command line tools and an API to manipulate phylogenetic trees. It is implemented in Go language.
evolbioinfo/goalign
Goalign is a set of command line tools and an API to manipulate multiple sequence alignments. It is implemented in Go language.
evolbioinfo/pastml
Ancestral character reconstruction and visualisation for rooted phylogenetic trees
evolbioinfo/booster
evolbioinfo/phylodeep
PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.
evolbioinfo/dockerfiles
Dockerfiles for tools commonly used for phylogenetic analyses
evolbioinfo/bdei
Birth-Death Exposed-Infectious (BDEI) model parameter inference from phylogenetic trees
evolbioinfo/condor
ConDor: a workflow to detect convergent evolution in large protein alignments
evolbioinfo/treesimulator
evolbioinfo/phylocovid
evolbioinfo/bayesian_bootstrap_analyses
evolbioinfo/bdct
Birth-death epidemiological parameter estimator accounting for partner notification
evolbioinfo/booster-web
booster-web
evolbioinfo/booster-workflows
evolbioinfo/cytopast
cytopast is a python3 module that creates zoomable HTML visualisation of phylogenetic trees with annotated nodes
evolbioinfo/geo_subsampler
A phylogeny subsampling tool combining geographic proportions and phylogenetic diversity
evolbioinfo/condor-analysis
Files and scripts from ConDor analysis
evolbioinfo/pastmlweb
Web-app for PastML
evolbioinfo/bayesian_bootstrap
evolbioinfo/HIV1-CRF19_Cuba
Phylogenetic analyses of CRF19 spread in Cuba and worldwide
evolbioinfo/HIV1-UK
Analysis of drug resistance mutation patterns in the UK
evolbioinfo/gotree_usecase
evolbioinfo/HIV_SA
evolbioinfo/indelible
evolbioinfo/jphmm_tools
Methods for extracting information from jpHMM (http://jphmm.gobics.de) output.
evolbioinfo/lsd-web
evolbioinfo/phylodeep_data_bd
Data needed for CI computation with Birth-Death (BDEI) model in [PhyloDeep](https://github.com/evolbioinfo/phylodeep).
evolbioinfo/phylodeep_data_bdei
Data needed for CI computation with Birth-Death Exposed-Infectious (BDEI) model in [PhyloDeep](https://github.com/evolbioinfo/phylodeep).
evolbioinfo/phylodeep_data_bdss
Data needed for CI computation with Birth-Death model with superspreading (BDSS) in [PhyloDeep](https://github.com/evolbioinfo/phylodeep)
evolbioinfo/zika_Vietnam
Phylogeographic analyses of ZIKV