evolbioinfo/pastml

Issues

• Pastml should stop with an error when internal node labels are not unique

  #23 opened 9 months ago by stitam
  1

• problems running pastML from bioconda install

  #21 opened a year ago by plasmid02
  2

• Measure changes in state across the phylogeny?

  #22 opened a year ago by maxgmarin
  0

• Does it only support discrete data predictions?

  #20 opened a year ago by zpinocchio
  1

• exporting edge weight from compressed html to pajek file

  #19 opened 2 years ago by drxilu
  4

• put pastml on conda-forge?

  #17 opened 2 years ago by harmsm
  5

• not able to run Albanian example data

  #15 opened 3 years ago by TYMichaelsen
  2

• Estimating parameters on a (bootstrap) forest

  #9 opened 3 years ago by annazhukova
  1

• compressed tree output as file

  #16 opened 3 years ago by TYMichaelsen
  5

• User-specified rate matrix

  #13 opened 3 years ago by annazhukova
  0

• 'list' object has no attribute 'read'

  #14 opened 4 years ago by Morteza-M-Saber
  2

• Multiple threads spawned

  #10 opened 5 years ago by Eric-CH-Chen
  1

• Model selection

  #12 opened 5 years ago by annazhukova
  0

• Recontruction fails without error

  #11 opened 5 years ago by matthieu-haudiquet
  3

• Export to svg

  #6 opened 5 years ago by annazhukova
  1

• Allow for multiple trees

  #8 opened 5 years ago by annazhukova
  1

• Handle time-scaled trees

  #5 opened 5 years ago by annazhukova
  1

• Check encoding issues

  #7 opened 5 years ago by annazhukova
  0

• Display clade sizes

  #4 opened 5 years ago by annazhukova
  0

• Implement MPPE

  #3 opened 5 years ago by annazhukova
  0

• Different weights for node and branch sizes during importance calucation

  #2 opened 6 years ago by annazhukova
  0

• model and prediction method not working properly

  #1 opened 6 years ago by d-j-e
  1