evolbioinfo/pastml

Estimating parameters on a (bootstrap) forest

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Potentially could be useful to optimise model parameters on a forest of potential trees (instead of a single tree), e.g. obtained from bootstrap or with different starting points or different tree inference tools, etc. Then display the results with the parameters on the tree of interest, i.e. work with the forest but visualise/optput the ACR only for the tree of interest.

Implemented a forest, but displaying all of them.