maxgmarin

Computational biologist specializing in genome analysis, evolution, and long-read sequencing technologies.

Harvard Medical SchoolBoston, MA

Pinned Repositories

mtb-illumina-wgs-evaluation
Repository for analysis of Benchmarking the accuracy of short-read sequencing across the M. tuberculosis genome, 2022, Bioinformatics.
Language:Jupyter Notebook6 4 00
AC209a_FinalProject_EEM
AC209a Final Project Website
Language:Ruby0 0 10
bactmap
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
Language:Nextflow1 0 00
erdman-asm-explore
Repo for collaboration on assembly of Erdman genome
Language:Jupyter Notebook10
jekyll-now-mgm
Build a Jekyll blog in minutes, without touching the command line.
Language:CSS0 0 00
Mtb-ISEMapper
An end-to-end Snakemake pipeline for analysis of IS6110 transposon insertions in the M. tuberculosis genome
Language:Python2 1 00
panqc
A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses
Language:Python16 2 10
pgqc
The Pan-genome quality control (PQQC) toolkit is for evaluation of DNA sequence redundancy in analyzed pan-genomes (ie Panaroo or Roary).
Language:Python0 2 00
pupmapper
A tool for calculation of pileup mappability for any genome of interest.
Language:Python8 1 00
SB220_RNAseq_Workshop
This repository is for the RNAseq Workshop that is part of SB220: Quantitative Measurement and Analysis
Language:Jupyter Notebook0 0 00

maxgmarin/panqc
A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses
Language:Python16 2 10
maxgmarin/pupmapper
A tool for calculation of pileup mappability for any genome of interest.
Language:Python8 1 00
maxgmarin/Mtb-ISEMapper
An end-to-end Snakemake pipeline for analysis of IS6110 transposon insertions in the M. tuberculosis genome
Language:Python2 1 00
maxgmarin/bactmap
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
Language:Nextflow1 0 00
maxgmarin/erdman-asm-explore
Repo for collaboration on assembly of Erdman genome
Language:Jupyter Notebook10
maxgmarin/AC209a_FinalProject_EEM
AC209a Final Project Website
Language:Ruby0 0 10
maxgmarin/jekyll-now-mgm
Build a Jekyll blog in minutes, without touching the command line.
Language:CSS0 0 00
maxgmarin/pgqc
The Pan-genome quality control (PQQC) toolkit is for evaluation of DNA sequence redundancy in analyzed pan-genomes (ie Panaroo or Roary).
Language:Python0 2 00
maxgmarin/SB220_RNAseq_Workshop
This repository is for the RNAseq Workshop that is part of SB220: Quantitative Measurement and Analysis
Language:Jupyter Notebook0 0 00