Pinned Repositories
A-to-Z-Resources-for-Students
Curated list of resources for college students
AchillesWeb
Interactive web site for reviewing the results of the Achilles R package.
AlexaPi
Alexa client for all your devices! # No active development. PRs welcome # consider https://github.com/respeaker/avs instead
alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
amazon-genomics-cli
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
ASAR
Advanced metagenomic Sequence Analysis in R
Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
AutoBA
An AI Agent for Fully Automated Multi-omic Analyses
GenLang_Math_GWAS
fabbondanza's Repositories
fabbondanza/gdc-docs
Official repository for GDC User Guides in Markdown format
fabbondanza/cheatsheets
RStudio Cheat Sheets
fabbondanza/plotly
An interactive graphing library for R
fabbondanza/WhiteRabbit
WhiteRabbit is a small application that can be used to analyse the structure and contents of a database as preparation for designing an ETL. It comes with RabbitInAHat, an application for interactive design of an ETL to the OMOP Common Data Model with the help of the the scan report generated by White Rabbit.
fabbondanza/drake
An R-focused pipeline toolkit for reproducibility and high-performance computing
fabbondanza/DataExplorer
Automate Data Exploration and Treatment
fabbondanza/tidy-text-mining
Manuscript of the book "Tidy Text Mining with R" by Julia Silge and David Robinson
fabbondanza/data-science-ipython-notebooks
Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.
fabbondanza/rstudio-conf
Materials for rstudio::conf
fabbondanza/CommonDataModel
Definition and DDLs for the OMOP Common Data Model (CDM)
fabbondanza/EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
fabbondanza/tweet-conf-dash
A shiny twitter conference dashboard
fabbondanza/opencga
An Open Computational Genomics Analysis platform for big data processing and analysis in genomics
fabbondanza/OHDSI-in-a-Box
Virtual Machine containing SynPUF data in OMOP CDM, a RDBS including query client, WebAPI, ATLAS, R and Python.
fabbondanza/shiny-examples
fabbondanza/NanoR
R package for user-friendly analysis and comparison of ONT data
fabbondanza/cheatsheets-ai
Essential Cheat Sheets for deep learning and machine learning researchers https://medium.com/@kailashahirwar/essential-cheat-sheets-for-machine-learning-and-deep-learning-researchers-efb6a8ebd2e5
fabbondanza/OpenRefine
OpenRefine is a free, open source power tool for working with messy data and improving it
fabbondanza/pdfs
Technically-oriented PDF Collection (Papers, Specs, Decks, Manuals, etc)
fabbondanza/pheweb
A tool to build multi-phenotype GWAS browsers
fabbondanza/A-to-Z-Resources-for-Students
Curated list of resources for college students
fabbondanza/Basecalling-comparison
A comparison of different Oxford Nanopore basecallers
fabbondanza/GWASReview
A Scientometric Review of Genome Wide Association Studies
fabbondanza/vg
tools for working with genome variation graphs
fabbondanza/nextflow
A DSL for data-driven computational pipelines
fabbondanza/tmap
R package for thematic maps
fabbondanza/bGWAS
R package for Bayesian Genome-Wide Association Study
fabbondanza/GEMMA
Genome-wide Efficient Mixed Model Association
fabbondanza/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
fabbondanza/TwoSampleMR
R package for performing 2-sample MR using MR-Base database