Pinned Repositories
A-to-Z-Resources-for-Students
Curated list of resources for college students
AchillesWeb
Interactive web site for reviewing the results of the Achilles R package.
AlexaPi
Alexa client for all your devices! # No active development. PRs welcome # consider https://github.com/respeaker/avs instead
alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
amazon-genomics-cli
applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
ASAR
Advanced metagenomic Sequence Analysis in R
Atlas
ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
AutoBA
An AI Agent for Fully Automated Multi-omic Analyses
GenLang_Math_GWAS
fabbondanza's Repositories
fabbondanza/gnomad-sv-pipeline
Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2019)
fabbondanza/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
fabbondanza/wgsim
Reads simulator
fabbondanza/nfcamp-tutorial
A tutorial for DLS-2 migration
fabbondanza/h2-GRE
Scripts for GRE
fabbondanza/dbparser
:exclamation: This is a read-only mirror of the CRAN R package repository. dbparser — 'DrugBank' Database XML Parser. Homepage: https://dainanahan.github.io/dbparser/index.html Report bugs for this package: https://github.com/Dainanahan/dbparser/issues
fabbondanza/septic_shock_degs
Septic Shock Differential Expression Genes Analysis
fabbondanza/alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
fabbondanza/oneliners
Useful bash one-liners for bioinformatics.
fabbondanza/vcftools
A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
fabbondanza/TileDB-R
R interface to the TileDB storage manager
fabbondanza/google-landmark
Dataset with 5 million images depicting human-made and natural landmarks spanning 200 thousand classes.
fabbondanza/Smart-Security-Camera
IoT security camera running open-cv for object detection 📹
fabbondanza/bigrquery
An interface to Google's bigquery from R.
fabbondanza/mtag
Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
fabbondanza/gwas-tools
🛠️ Short pipelines to deal with GWAS data.
fabbondanza/Neoforesight
fabbondanza/fam-gwas
Family-based GWAS analysis pipeline
fabbondanza/DLQuant
Applying Deep Learning and NLP in Quantitative Trading
fabbondanza/gwas_scripts
Codebook from my GWAS cookbook
fabbondanza/DosageConvertor
DosageConvertor is a C++ tool to convert dosage files (in VCF format) from Minimac3/4 to other formats such as MaCH or PLINK.
fabbondanza/multivariate_GWAMA
Code for multivariate genome wide association meta analysis
fabbondanza/eviatlas
An R tool for systematic maps.
fabbondanza/quick-SQL-cheatsheet
A quick reminder of all SQL queries and examples on how to use them.
fabbondanza/training-material
A collection of Galaxy-related training material
fabbondanza/telegram.bot
Develop a Telegram Bot with R
fabbondanza/SPARK_Scripts
Scripts used in SPARK project
fabbondanza/tq.pl
fabbondanza/cthreepo
A python script to interconvert seq-ids in gff3, gtf, bed and other files.
fabbondanza/DataScienceResources
Open Source Data Science Resources.