fabianackle

fabianackle's Stars

• DeepLabCut/DeepLabCut

  Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

  Language:Python4.5k1.6k

• duckdb/duckdb

  DuckDB is an analytical in-process SQL database management system

  Language:C++22.7k1.8k

• sickcodes/Docker-OSX

  Run macOS VM in a Docker! Run near native OSX-KVM in Docker! X11 Forwarding! CI/CD for OS X Security Research! Docker mac Containers.

  Language:Shell45.4k2.4k

• nf-core/modules

  Repository to host tool-specific module files for the Nextflow DSL2 community!

  Language:Nextflow276683

• nextflow-io/patterns

  A curated collection of Nextflow implementation patterns

  Language:Nextflow32972

• nextflow-io/awesome-nextflow

  A curated list of nextflow based pipelines

  56890

• rcedgar/usearch12

  Open-source usearch

  Language:C++748

• gbouras13/phold

  Phage Annotation using Protein Structures

  Language:Python764

• bactopia/bactopia

  A flexible pipeline for complete analysis of bacterial genomes

  Language:Nextflow39768

• shenwei356/seqkit

  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

  Language:Go1.3k157

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++1.9k332

• GoogleChromeLabs/squoosh

  Make images smaller using best-in-class codecs, right in the browser.

  Language:TypeScript21.7k1.5k

• rrwick/Filtlong

  quality filtering tool for long reads

  Language:C++27526

• imputnet/cobalt

  best way to save what you love

  Language:Svelte14.4k1.1k

• lbcb-sci/herro

  HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

  Language:Rust17210

• brentp/mosdepth

  fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

  Language:Nim686100

• AnimalGenomicsETH/pangenome_KIT

  Language:Python1

• dabochen/spreadsheet-is-all-you-need

  A nanoGPT pipeline packed in a spreadsheet

  2k120

• conda-forge/miniforge

  A conda-forge distribution.

  Language:Shell6.2k318

• lh3/bwa

  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  Language:C1.5k553

• giameier/DMS_ABC

  Deep mutational scanning of ABCtransporter is a software for processing and analyzing of sequence alignment files from deep mutational scanning experiments of ABC transporter unsing paired overlapp sequences.

  Language:Python11

• nf-core/nanoseq

  Nanopore demultiplexing, QC and alignment pipeline

  Language:Nextflow16880

• de-Boer-Lab/PlasmidLibraryCulture

  Language:Jupyter Notebook1

• nanoporetech/dorado

  Oxford Nanopore's Basecaller

  Language:C++48159

• dabeaz-course/python-mastery

  Advanced Python Mastery (course by @dabeaz)

  Language:Python10.6k1.8k

• oxpig/ANARCI

  Antibody Numbering and Antigen Receptor ClassIfication

  Language:Python17788

• ACCLAB/dabestr

  Data Analysis with Bootstrap Estimation in R

  Language:R21534

• cxli233/FriendsDontLetFriends

  Friends don't let friends make certain types of data visualization - What are they and why are they bad.

  Language:R6.3k226

• sami-chaaban/PlotAkta

  Convert Akta results from Unicorn 7 into a nicely formatted plot

  Language:Python101

• daenuprobst/molzip

  The gzip classification method implemented for molecule classification.

  Language:Python5310