Pinned Repositories
apica
API for compressed cell atlases
atlas_landmarks
Single cell gene expression data, averaged or subsampled by cell type
cell_atlas_approximations
This is an umbrella repo describing cell atlas approximations
cell_atlas_approximations_API
APIs for cell atlas approximations
cell_atlas_approximations_HI
Human interface for cell atlas approximations
cell_atlas_approximations_NLP
Natural language processor for cell atlas approximations
igraph_docs_Adrian
northstar
Single cell type annotation guided by cell atlases, with freedom to be queer
northstar_analysis
Jupyter notebooks and scripts to perform atlas-based scRNA-seq analysis using Northstar
treasuremap
Treasuremap is a variation of UMAP that embeds a network with some fixed nodes.
fabilab's Repositories
fabilab/northstar
Single cell type annotation guided by cell atlases, with freedom to be queer
fabilab/cell_atlas_approximations
This is an umbrella repo describing cell atlas approximations
fabilab/northstar_analysis
Jupyter notebooks and scripts to perform atlas-based scRNA-seq analysis using Northstar
fabilab/apica
API for compressed cell atlases
fabilab/atlas_landmarks
Single cell gene expression data, averaged or subsampled by cell type
fabilab/cell_atlas_approximations_API
APIs for cell atlas approximations
fabilab/cell_atlas_approximations_compression
Compression for cell atlas approximations
fabilab/cell_atlas_approximations_HI
Human interface for cell atlas approximations
fabilab/cell_atlas_approximations_NLP
Natural language processor for cell atlas approximations
fabilab/data-compression-and-APIs-for-cell-atlases
fabilab/igraph_docs_Adrian
fabilab/treasuremap
Treasuremap is a variation of UMAP that embeds a network with some fixed nodes.
fabilab/cell_atlas_approximations_disease_API
APIs for atlas approximations on human disease
fabilab/cell_atlas_approximations_disease_compression
Approximation/compression scripts for atlas approximations on human disease
fabilab/scquill
Approximate any single cell data set, saving >99% of memory and runtime.