Pinned Repositories
Colab_SR-Nearest-Neighbour-Notebooks
IJ-Manual_Tracking
This ImageJ plugin is aimed at tracking simple object, in 2D and/or 3D.
IJ-Plugin_3D_object_counter
This ImageJ plugin provides a way to individualize and caracterize 3D objects from a stack.
IJ-Plugin_BIAS2015-Colocalisation-Simulator
BIAS2015 Colocalisation Simulator
IJ-Plugin_JACoP
Just Another Colocalisation Plugin
IJ-Plugin_KymoButler_for_ImageJ
IJ-Plugin_KymoToolBox
KymoToolBox is an ImageJ plugin dedicated to construction and analysis of kymographs
IJ-Plugin_macroBricks
macroBricks is an ImageJ plugin dedicated at keeping track of your most useful user-defined macro functions
IJ-Plugin_PALM_Zeiss_workflow
An ImageJ workflow for semi-automated laser microdissection using Zeiss PALM system
Training_material
Some of my training materials
fabricecordelieres's Repositories
fabricecordelieres/Training_material
Some of my training materials
fabricecordelieres/IJ-Plugin_JACoP
Just Another Colocalisation Plugin
fabricecordelieres/IJ-Plugin_KymoButler_for_ImageJ
fabricecordelieres/IJ-Plugin_KymoToolBox
KymoToolBox is an ImageJ plugin dedicated to construction and analysis of kymographs
fabricecordelieres/IJ-Manual_Tracking
This ImageJ plugin is aimed at tracking simple object, in 2D and/or 3D.
fabricecordelieres/IJ-Plugin_PALM_Zeiss_workflow
An ImageJ workflow for semi-automated laser microdissection using Zeiss PALM system
fabricecordelieres/Colab_SR-Nearest-Neighbour-Notebooks
fabricecordelieres/IJ-Plugin_3D_object_counter
This ImageJ plugin provides a way to individualize and caracterize 3D objects from a stack.
fabricecordelieres/IJ-Plugin_KymoToolSet
fabricecordelieres/IJ-Plugin_Metamorph-Companion
This plugin is dedicated to handling in ImageJ data from/destined to the Metamorph software
fabricecordelieres/IJ-Toolset_SynaptosomesMacro
This toolset is aimed at quantifying the proteins' proximity and their recruitment on synaptosomes, on a structure per structure basis.
fabricecordelieres/3D-print_Contactless-door-opener
fabricecordelieres/3D-print_NEUBIAS2020_Stand
The 3D stand made for the NEUBIAS 2020 conference @ Bordeaux
fabricecordelieres/Colab-Metrology_Report_Script
fabricecordelieres/Colab_Simple-batch-segmentation-using-CellPose
fabricecordelieres/IJ-Macro_APP-Aggregates-Per-Plaques-NanoZoomer
The aim of this ImageJ toolset is to isolate and count both the plaques and aggregates, measure the average surface of the plaques, and the average number of aggregates on the plaques/within a neighborhood of 20µm around the plaques.
fabricecordelieres/IJ-Macro_APP-Plaques-NanoZoomer
The purpose of the ImageJ macro is to segment, count and caracterize the APP aggregates in relevent regions over brain slices acquired using the NanoZoomer Imager.
fabricecordelieres/IJ-Macro_Assisted-seg-histo-img
Assisted segmentation of histological images
fabricecordelieres/IJ-Macro_FRAP-MM
This macro is aimed at basic data extraction/normalisation from FRAP datasets acquired using the Metamorph software
fabricecordelieres/IJ-Plugin_Analyze-Particles-ColorMap
This ImageJ plugin is aimed at providing a way to easily get a visual map of parameters extracted from the ImageJ "Analyze Particles" function.
fabricecordelieres/IJ-Plugin_DTC
Detect, Track, Colocalize
fabricecordelieres/IJ-Plugin_MetroloJ
fabricecordelieres/IJ-Plugin_Zip-It
This plugin is aimed at providing a way to easily create a Zip file from a folder from ImageJ macros
fabricecordelieres/IJ-Toolset_AggregatesAndMTs
fabricecordelieres/IJ-Toolset_Field-Homogeneity-Tool
fabricecordelieres/IJ-Toolset_PD-analysis
fabricecordelieres/IJ-Toolset_Root-Photoactivation-Analysis
fabricecordelieres/Python_Zen-CD7-SandBox
This repository is meant to accomodate some experimentations about Zeiss Zen/CD7 connectivity with Python
fabricecordelieres/PyTorch-Course
PyTorch Course
fabricecordelieres/Tools4RPG_Generate-Portraits