fairgenomes/fairgenomes-semantic-model

Issues

• Reference to non-existent IAO term

  #155 opened 4 months ago
  0

• Align with GSC MIxS

  #154 opened 4 months ago
  0

• Import into EMX-2

  #153 opened 6 months ago
  1

• Better ontology type for gene

  #145 opened 2 years ago
  0

• Better disease ontology type

  #144 opened 2 years ago
  0

• Expand sequencing model instrument list

  #142 opened 2 years ago
  0

• Make units a lookup

  #141 opened 2 years ago
  0

• Rework pathological state of a material

  #140 opened 2 years ago
  1

• Improve study design

  #139 opened 2 years ago
  0

• Improve consanguinity

  #137 opened 2 years ago
  0

• Make FAIR Genomes cross-species compatible

  #132 opened 2 years ago
  1

• Suggestion: create human-friendly schema browser

  #131 opened 2 years ago
  0

• Investigate using LinkML to represent FAIR Genomes schema

  #128 opened 2 years ago
  1

• Need a way to express fetal samples

  #126 opened 2 years ago
  0

• Use median instead of average values if possible

  #119 opened 2 years ago
  3

• Check interoperability with SPHN

  #118 opened 3 years ago
  0

• Patient can have multiple ICFs and NGS analyses, but these are not linked

  #116 opened 3 years ago
  0

• Request: add provisional phenotype attribute to clinical module?

  #115 opened 2 years ago
  1

• allowrecontacting option "For incidental findings" description and The Internationalized Resource Identifier for this term do NOT match

  #113 opened 2 years ago
  1

• Add ERNs to organisations/institutes?

  #112 opened 3 years ago
  2

• Investigate how FDP can be connected to FAIR Genomes schema

  #111 opened 3 years ago
  0

• Check out Alpha-ID-SE - BfArM coding

  #110 opened 3 years ago
  0

• Term deprecation mechanism needed

  #109 opened 3 years ago
  0

• Implement ontology alternatives i.e. mappings in the schema

  #108 opened 3 years ago
  2

• Typo in PI

  #107 opened 2 years ago
  0

• Add VKGL/VKGN working group to list of Institutes

  #106 opened 3 years ago
  0

• Extend FAIR Genomes with full ISA-Tab schema for X-omics

  #105 opened 3 years ago
  0

• Support various b37/hg19 flavours

  #104 opened 3 years ago
  0

• Make parent/child relations explicit?

  #103 opened 3 years ago
  0

• Consider standardizing qualifiers/modifiers

  #102 opened 3 years ago
  0

• Consent form creator should be using DC:creator as predicate

  #101 opened 2 years ago
  0

• RDF resources are not under versioned URLs

  #100 opened 3 years ago
  0

• Add Illumina – TruSeq DNA to NGS kits

  #95 opened 3 years ago
  1

• Fix discrepancy of biospecimentype element vs materialtype lookup

  #93 opened 3 years ago
  1

• Fix MOLGENIS homepage styling

  #89 opened 3 years ago
  1

• Include element ontologies in EMX description field

  #88 opened 3 years ago
  1

• Add 'lab indication' i.e. reason for testing?

  #87 opened 2 years ago
  2

• Generate molgenis_prepare file, replacing setup.sh in Docker image

  #86 opened 3 years ago
  0

• Update Data use permissions description

  #81 opened 3 years ago
  0

• Need better description for 'Consent form used'

  #80 opened 3 years ago
  0

• Update 'person' nomenclature in consent (and other modules)

  #79 opened 3 years ago
  0

• Update 'Collected by'

  #78 opened 3 years ago
  0

• Map FAIR Genomes to BioSchemas

  #73 opened 3 years ago
  0

• Perhaps add template and type to Study

  #72 opened 3 years ago
  0

• Harmonize Study with (semantic) ISA-TAB

  #70 opened 3 years ago
  1

• In ART-DECOR XML, Concepts should go before all Exceptions

  #69 opened 3 years ago
  0

• Replace InclusionCriteria codes

  #66 opened 3 years ago
  0

• Replace MaterialType codes

  #65 opened 3 years ago
  0

• Add xsd data types to TTL files

  #64 opened 3 years ago
  0

• Curate lookup types

  #63 opened 3 years ago
  1