fairytaildingdong

fairytaildingdong's Stars

• samtools/samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data

  Language:C1.7k1001.3k582

• dzerbino/velvet

  Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829

  Language:C2852937100

• mgalardini/pyseer

  SEER, reimplemented in python 🐍🔮

  Language:Python1151022227

• johnlees/seer

  sequence element (kmer) enrichment analysis

  Language:C++4377710

• sgearle/bugwas

  Locus and lineage tests for bacterial GWAS

  Language:R309165

• jessiewu/bacterialGWAS

  A pipeline for performing genome-wide association tests for bacterial genomes.

  Language:R289817

• janepipistrelle/bacterial_GWAS_tutorial

  Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop

  192218

• johnlees/which_tree

  Testing of phylogenetic inference methods

  Language:R10203

• chinchliff/physcripts

  Python scripts (and a few non-python) that have come in handy for various phylogenetics-related tasks

  Language:Python6306

• MRCIEU/qqman_multiple_colours

  Manhattan plot function which highlights SNPs in different colours

  Language:R6901

• davideyre/bug-flow

  Language:Nextflow5102

• BacterialCommunitiesAndPopulation/Thursday19thMay

  3514