faisalml

faisalml's Stars

• mahmoodlab/TITAN

  Multimodal Whole Slide Foundation Model for Pathology

  Language:Jupyter Notebook12413

• mahmoodlab/CLAM

  Open source tools for computational pathology - Nature BME

  Language:Python1.2k373

• mahmoodlab/MMP

  Multimodal prototyping for cancer survival prediction - ICML 2024

  Language:Jupyter Notebook637

• mahmoodlab/TANGLE

  Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024

  Language:Python883

• mahmoodlab/PANTHER

  Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

  Language:Jupyter Notebook10311

• mahmoodlab/HEST

  HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024 (Spotlight)

  Language:Python19115

• mahmoodlab/SurvPath

  Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024

  Language:Python1196

• mahmoodlab/CONCH

  A vision-language foundation model for computational pathology - Nature Medicine

  Language:Python29323

• mahmoodlab/UNI

  Towards a general-purpose foundation model for computational pathology - Nature Medicine

  Language:Jupyter Notebook36752

• mahmoodlab/MAPS

  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications

  Language:Jupyter Notebook489

• mahmoodlab/multimodal-cancer-origin-prediction

  Deep learning-based multimodal integration of histology and genomics to improves cancer origin prediction

  Language:Python232

• mahmoodlab/SISH

  Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering

  Language:Python10026

• mahmoodlab/varpool

  Variance pooling to incorporate ITH in CPath models - MICCAI 2022

  Language:Python235

• mahmoodlab/HIPT

  Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)

  Language:Jupyter Notebook52191

• mahmoodlab/MCAT

  Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021

  Language:Jupyter Notebook17936

• mahmoodlab/HistoFL

  Federated Learning for Computational Pathology - Medical Image Analysis

  Language:Python4713

• AstroPathJHU/AstroPathPipeline

  The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell resolution.

  Language:Python183

• mahmoodlab/Patch-GCN

  Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

  Language:Python13330

• mahmoodlab/PORPOISE

  Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell

  Language:Jupyter Notebook19237

• mahmoodlab/CRANE

  Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine

  Language:Python288

• mahmoodlab/TOAD

  AI-based pathology predicts origins for cancers of unknown primary - Nature

  Language:Python17048

• utkuozbulak/pytorch-cnn-visualizations

  Pytorch implementation of convolutional neural network visualization techniques

  Language:Python7.9k1.5k

• mahmoodlab/PathomicFusion

  Fusing Histology and Genomics via Deep Learning - IEEE TMI

  Language:Jupyter Notebook28383

• mahmoodlab/NucleiSegmentation

  cGAN-based Multi Organ Nuclei Segmentation

  Language:Python18562

• faisalml/Delving-deep-into-GANs

  :mag: A curated list of Generative Adversarial Networks (GANs) resources sorted by reputation

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