fasterius
Bioinformatician working at @NBISweden with interests in computational biology, pipeline development and data science.
@NBISwedenStockholm, Sweden
Pinned Repositories
colours
A KTH-based colour palette and a script to show terminal colours.
dotfiles
My personal collection of dotfiles.
mBIT
Miscellaneous bioinformatic tools creating during my PhD studies, with everything from differential expression analysis of RNA-seq data to machine learning.
nbis-support-template
A minimalistic template for making and working with reproducible NBIS support projects.
seqCAT
A Bioconductor R-package for cell evaluation, characterisation and authentication using high throughput sequencing data.
simple-zoom.nvim
A simple plugin to add a Tmux-like zoom functionality to Neovim
singularity-in-docker
A small repository with instructions on how to build Singularity images inside a Docker container.
VarClust
A Python package for clustering of single nucleotide variants from high-through seqencing data.
workshop-reproducible-research
NBIS/ELIXIR course: Tools for Reproducible Research
spatialvi
Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.
fasterius's Repositories
fasterius/seqCAT
A Bioconductor R-package for cell evaluation, characterisation and authentication using high throughput sequencing data.
fasterius/VarClust
A Python package for clustering of single nucleotide variants from high-through seqencing data.
fasterius/simple-zoom.nvim
A simple plugin to add a Tmux-like zoom functionality to Neovim
fasterius/mBIT
Miscellaneous bioinformatic tools creating during my PhD studies, with everything from differential expression analysis of RNA-seq data to machine learning.
fasterius/singularity-in-docker
A small repository with instructions on how to build Singularity images inside a Docker container.
fasterius/dotfiles
My personal collection of dotfiles.
fasterius/nbis-support-template
A minimalistic template for making and working with reproducible NBIS support projects.
fasterius/colours
A KTH-based colour palette and a script to show terminal colours.
fasterius/fasterius.github.io
My personal website.
fasterius/nf-core-quarto-template
fasterius/RNA-VC
A Snakemake pipeline for variant calling and gene expression estimation of public RNA-seq data.
fasterius/ATRADA
A R-package for parsing, analysing and visualising data from turbidity reduction assays.
fasterius/bioconda-recipes
Conda recipes for the bioconda channel.
fasterius/Comment.nvim
:brain: :muscle: // Smart and powerful comment plugin for neovim. Supports treesitter, dot repeat, left-right/up-down motions, hooks, and more
fasterius/development-guidelines
Small repository, this one. Contains a single document (README.md) describing guidelines for the development of software within NBIS.
fasterius/GGEOM
A collection of small scripts for fetching and parsing metadata from the GEO and SRA.
fasterius/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
fasterius/multi-package-containers
Testing building mulled containers for multi-requirement tools.
fasterius/nextflow-novice
A Carpentries style resource for teaching Nextflow for Reproducible Scientific Analyses.
fasterius/telekasten.nvim
A Neovim (lua) plugin for working with a markdown zettelkasten / wiki and mixing it with a journal, based on telescope.nvim
fasterius/test-datasets
Test data to be used for automated testing with the nf-core pipelines
fasterius/vim-lsp-settings
Auto configurations for Language Server for vim-lsp
fasterius/workflows-nextflow
Workflow management with Nextflow and nf-core