Issues
- 1
MultiQC 1.21 doesn't support genomic_dna section
#84 opened by Alan-pad - 1
- 4
Aggregate samples into single object
#56 opened by grst - 12
Add MultiQC report
#40 opened by grst - 1
Create a workflow schematic
#12 opened by fasterius - 1
Rename the pipeline
#65 opened by fasterius - 3
- 20
Add SpatialData as output
#39 opened by grst - 1
Use `to_legacy_anndata` function from `spatialdata_io` instead of custom code
#75 opened by fasterius - 2
Add checks for QC filtering
#46 opened by fasterius - 1
- 0
- 1
Auto-detection of samplesheet type
#47 opened by fasterius - 0
Full-size test dataset
#48 opened by grst - 1
Implement tests using nf-test
#36 opened by grst - 8
Update spaceranger to 2.x
#37 opened by grst - 0
- 2
Is Space Ranger Cytassist supported?
#34 opened by pakiessling - 0
Add documentation for all workflow parts
#11 opened by fasterius - 0
- 0
Optimise input/output file formats
#10 opened by fasterius - 1
Add reporting of pipeline results
#13 opened by fasterius - 0
Harmonisation between Python / R
#7 opened by fasterius - 1
Remove redundant code
#6 opened by fasterius - 0
- 3
Add Docker containers
#8 opened by fasterius - 2
- 2
Module compilation error
#22 opened by mhjiang97 - 1