fbaumdicker
I am a mathematician working on subjects in evolutionary and quantitative biology with a special focus on prokaryotic genome evolution.
University of Tübingen
Pinned Repositories
adding-species-manuscript
manuscript materials for the adding species paper
AIMsetfinder
AIMsetfinder is a collection of Rscripts to identify sets of Ancestry Informative Markers (AIMs), that minimize the logloss error of a naive Bayes classifier.
applied_population_genetics
A textbook on population genetics
codebook
Source for The Good Research Code Handbook
erc-latex-template
LaTeX template for ERC proposals
goldfinder
Goldfinder detects gene co-occurrence and avoidance accounting for phylogenetic relationships
lecture_notes
Lecture Notes on Computational and Mathematical Population Genetics
ML_in_pop_gen
panicmage
panicmage can estimate gene gain and loss rates, the size of pan-genomes, and test for neutral evolution.
SpacerPlacer
ancestral reconstruction and likelihood analysis for CRISPR spacer arrays
fbaumdicker's Repositories
fbaumdicker/goldfinder
Goldfinder detects gene co-occurrence and avoidance accounting for phylogenetic relationships
fbaumdicker/SpacerPlacer
ancestral reconstruction and likelihood analysis for CRISPR spacer arrays
fbaumdicker/AIMsetfinder
AIMsetfinder is a collection of Rscripts to identify sets of Ancestry Informative Markers (AIMs), that minimize the logloss error of a naive Bayes classifier.
fbaumdicker/panicmage
panicmage can estimate gene gain and loss rates, the size of pan-genomes, and test for neutral evolution.
fbaumdicker/ML_in_pop_gen
fbaumdicker/adding-species-manuscript
manuscript materials for the adding species paper
fbaumdicker/applied_population_genetics
A textbook on population genetics
fbaumdicker/codebook
Source for The Good Research Code Handbook
fbaumdicker/erc-latex-template
LaTeX template for ERC proposals
fbaumdicker/lecture_notes
Lecture Notes on Computational and Mathematical Population Genetics
fbaumdicker/msprime
A reimplementation of Hudson's classical ms simulator for modern data sets.
fbaumdicker/msprime-1.0-paper
Publication describing msprime 1.0
fbaumdicker/pan-genome-analysis
Processing pipeline for pan-genome visulization and exploration
fbaumdicker/Phylogenetic-trees-python
This repository implements Phylogenetic Trees in Python
fbaumdicker/phylogenetics
A tutorial on making phylogenetic trees in python
fbaumdicker/SMBE-SGE-2019
Material for SMBE-SGE-2019 workshop
fbaumdicker/stdpopsim
A library of standard simulation models for msprime
fbaumdicker/Streptococcus-mutans-CRISPR-Spacers-Analysis
fbaumdicker/tangles