This repository contains raw data for "Investigating CRISPR spacer targets and their impact on genomic diversification of Streptococcus mutans" by Alejandro R. Walker and Robert C. Shields (link).
smu_spacers_all.fa: all CRISPR spacers extracted from S. mutans strains
phage_output.xlsx: S. mutans CRISPR spacer alignments to phage genomes
plasmids_output.xlsx: S. mutans CRISPR spacer alignments to plasmid sequences
ICE_output.xlsx: S. mutans CRISPR spacer alignments to integrative and conjugative element sequences
smutans_targets.xlsx: CRISPR spacers that align to S. mutans genes
gene_presence_absence_plus.xlsx: pangenome analysis of S. mutans genomes
Sm_plasmid.fasta: small curated database of known S. mutans plasmid sequences
S. mutans genomes in genbank format