fbreitwieser

Babboon By: Henry Henderson | License: Creative Commons Attribution (CC BY 4.0)

Pinned Repositories

centrifuge
Classifier for metagenomic sequences
Language:C++250 14 27073
bamcov
:boom: Quickly calculate and visualize sequence coverage in alignment files
Language:C99 5 69
card-krakendb
Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database
Language:R10 3 13
d3-hiervis
:cactus: Hierarchical visualization with D3
Language:JavaScript4 3 00
hiervis
Hierarchical visualization for R/Shiny
Language:R9 4 31
isobar
isobar - R library for the Analysis and quantitation of isobarically tagged MSMS proteomics data
Language:R9 4 58
krakenuniq
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
Language:C++225 16 16744
pavian
🌈 Interactive analysis of metagenomics data
Language:R403 20 11878
sankeyD3
D3 Sankey Network Graphs from R
Language:HTML68 9 2727
sendsms-scripts
Android command line SMS sending scripts
Language:Perl6 2 23

fbreitwieser's Repositories

fbreitwieser/pavian
🌈 Interactive analysis of metagenomics data
Language:R403 20 11878
fbreitwieser/krakenuniq
🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results
Language:C++225 16 16744
fbreitwieser/bamcov
:boom: Quickly calculate and visualize sequence coverage in alignment files
Language:C99 5 69
fbreitwieser/sankeyD3
D3 Sankey Network Graphs from R
Language:HTML68 9 2727
fbreitwieser/hiervis
Hierarchical visualization for R/Shiny
Language:R9 4 31
fbreitwieser/d3-hiervis
:cactus: Hierarchical visualization with D3
Language:JavaScript4 3 00
fbreitwieser/shinyFileTree
Language:JavaScript3 2 0
fbreitwieser/taxmash
Download scripts for Mash that put taxonomic information into the reference comments
Language:Perl2 2 11
fbreitwieser/cheatsheets
:ledger:
1 2 0
fbreitwieser/krakenuniq-manuscript-code
Supporting information and scripts for KrakenUniq (Breitwieser, Baker and Salzberg, 2018)
Language:HTML1 2 0
fbreitwieser/.vim
My .vim dotfiles and configurations.
Language:Vim script2 0
fbreitwieser/abricate
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
Language:Perl2 0
fbreitwieser/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell2 0
fbreitwieser/covid
Language:R2 0
fbreitwieser/covid-mortality
2 0
fbreitwieser/dotfiles-1
:wrench: .files, including ~/.macos — sensible hacker defaults for macOS
Language:Vim script2 0
fbreitwieser/htslib
C library for high-throughput sequencing data formats
Language:C2 0
fbreitwieser/i3status-rust
Very resourcefriendly and feature-rich replacement for i3status, written in pure Rust
Language:Rust2 0
fbreitwieser/krakenu-mss
fbreitwieser/lubridate
Make working with dates in R just that little bit easier
Language:R2 0
fbreitwieser/Mash
Fast genome and metagenome distance estimation using MinHash
Language:C++2 0
fbreitwieser/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
Language:C++2 01
fbreitwieser/mortality
Language:R2 0
fbreitwieser/ncbi-taxonomy
2 0
fbreitwieser/PocketBookDic
Script to convert dictionaries to pocketbook dictionary dic-format and Koreader optimized dictionaries.
Language:Perl1 0
fbreitwieser/polybar
A fast and easy-to-use status bar
Language:C++2 0
fbreitwieser/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Language:C2 0
fbreitwieser/sunburstR
R htmlwidget for sequence sunburst
Language:JavaScript2 0
fbreitwieser/vimrc
Language:Vim script2 0
fbreitwieser/windows-development-environment
:telescope: Turning Windows into an environment ready for modern development
Language:PowerShell2 0