Pinned Repositories
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epimedpipelines
A set of pipeleines dedicated to omics data integration
epimedtools
A package allowing multi-omics analysis using R
gardenr
make R grow up tomatoes
gse2study
A set of scripts to download raw data form NCBI, build an epimedtool study and more.
intro_r
An introduction to R
linear_models
A set of pedagogical documents to learn and teach linear models
mitoseq
mylabstocks
ptlmapper
This package contains functions that are used to map single-cell Probabilistic Trait Loci (scPTL). The principle of scPTL mapping is to consider a distribution of single-cell traits as the phenotype of a (multicellular) individual, to acquire this phenotype in many individuals, and to scan the genome for DNA variants that change this phenotype.
fchuffar's Repositories
fchuffar/epimedtools
A package allowing multi-omics analysis using R
fchuffar/gse2study
A set of scripts to download raw data form NCBI, build an epimedtool study and more.
fchuffar/mitoseq
fchuffar/ptlmapper
This package contains functions that are used to map single-cell Probabilistic Trait Loci (scPTL). The principle of scPTL mapping is to consider a distribution of single-cell traits as the phenotype of a (multicellular) individual, to acquire this phenotype in many individuals, and to scan the genome for DNA variants that change this phenotype.
fchuffar/gardenr
make R grow up tomatoes
fchuffar/linear_models
A set of pedagogical documents to learn and teach linear models
fchuffar/splinart-cpp
fchuffar/starting_kit_biodiv0.1
fchuffar/starting_kit_epiclock1.0
fchuffar/starting_kit_epismoke2.0
fchuffar/starting_kit_expred3.0
fchuffar/codabg
fchuffar/dmethr
DNA Methylation repression of transcriptional activity
fchuffar/dnamaging
A set scripts and vignettes allowing to build am epigentic clock model
fchuffar/epimedstudy
fchuffar/ewascombpr
A line that pipes epimedtools DNA methylation study to an ewas then to combp
fchuffar/fchuffar.github.io
Template for creating your website with R markdown.
fchuffar/fertility-prediction-challenge
Fertility prediction challenge
fchuffar/fonctionr
An empty R package to illustrate development practices in R: documentation, literate programming, testing, versioning, continuous integration.
fchuffar/forked_protopackage
fchuffar/logistic_models
A set of pedagogical documents to learn and teach logistic models
fchuffar/medepir
MEthylation DEconvoluation PIpeline in R
fchuffar/methepic_map
An R script that build a dictionary of probes according to array annotations
fchuffar/mixed_models
Mixed Models Practicles
fchuffar/momic
fchuffar/pipeline_mnase
A set of scripts that orchestrate the analysis of MNase-Seq and ChIP-Seq data.
fchuffar/pipeline_rnbeads
A set of scripts that orchestrate the analysis of RRBS data
fchuffar/practicle_sessions
A set of practicle sessions
fchuffar/protopackage
fchuffar/starting_kit_epismoke1.0
Starting kit for *epismoke1.0* challenge